RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 LGALS3P17931 250 aaKnown RBP5.1□□□□□ -1.59
VPS39-202ENST00000348544 EBI3Q14213 229 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 ATXN8Q156A1 80 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 C16orf92Q96LL3 132 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 OPRPNQ99935 248 aaPredicted RBP5.1□□□□□ -1.59
VPS39-202ENST00000348544 BEX4Q9NWD9 120 aaPredicted RBP5.1□□□□□ -1.59
VPS39-202ENST00000348544 ZNF580Q9UK33 172 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 IGHV3-64A0A075B6Q5 118 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 IGHV4OR15-8A0A075B7B6 117 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 A0A087WW49 117 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 TRAV21A0A0B4J279 112 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 B9A039 149 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 G3V318 75 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 LGALS9O00182 355 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 ATP6V0E1O15342 81 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 TRIAP1O43715 76 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 VMO1Q7Z5L0 202 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 TMEM141Q96I45 108 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 METTL26Q96S19 204 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 TIMM17AQ99595 171 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 PRO3102Q9H379 93 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 MDFICQ9P1T7 246 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 LENEPQ9Y5L5 61 aa5.09□□□□□ -1.59
VPS39-202ENST00000348544 TRBV10-2A0A0K0K1G8 114 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 TMEM223A0PJW6 202 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 H3BMM0 161 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 NXPH4O95158 308 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 Q1RN00 199 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 KLK9Q2XQG4 91 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 PRR30Q53SZ7 412 aaPredicted RBP5.09□□□□□ -1.6
VPS39-202ENST00000348544 MEIG1Q5JSS6 88 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 SUMO4Q6EEV6 95 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 UBE2WQ96B02 151 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 KLK9Q9UKQ9 250 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 ATMQ13315 3056 aa5.09□□□□□ -1.6
VPS39-202ENST00000348544 LEPROTO15243 131 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 PPP1R17O96001 155 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 MED14OSP0DP75 135 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 RNASE4P34096 147 aaKnown RBP5.08□□□□□ -1.6
VPS39-202ENST00000348544 C3orf56Q8N813 242 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 OR10J6PQ8NGY7 276 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 RELNP78509 3460 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 CACNA1HO95180 2353 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 TRBV30A0A0K0K1B3 111 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.08□□□□□ -1.6
VPS39-202ENST00000348544 SDHAF1A6NFY7 115 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 F6UB75 175 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 H7C423 109 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 M0R2P5 195 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 FOXC1Q12948 553 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 C9orf139Q6ZV77 190 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 FAM19A4Q96LR4 140 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 LINC00477Q96M19 166 aa5.08□□□□□ -1.6
VPS39-202ENST00000348544 A0A087WWL8 130 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 M0R1W7 72 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 SOCS3O14543 225 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 ZNF22P17026 224 aaPredicted RBP5.07□□□□□ -1.6
VPS39-202ENST00000348544 LITAFQ99732 161 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 CHCHD5Q9BSY4 110 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 TNFRSF18Q9Y5U5 241 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 A0A0J9YXY3 114 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 ADARB2-AS1A8MUL3 147 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 VCYO14598 125 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 C2orf82Q6UX34 121 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 Q6ZSV7 163 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 DEFB124Q8NES8 71 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 LINC01587Q99440 93 aa5.07□□□□□ -1.6
VPS39-202ENST00000348544 ANKRD11Q6UB99 2663 aaPredicted RBP5.06□□□□□ -1.6
VPS39-202ENST00000348544 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.06□□□□□ -1.6
VPS39-202ENST00000348544 TRBV27A0A0K0K1C4 114 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 UBE2E1P51965 193 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 APRG1Q8IVJ8 170 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 DUX3Q96PT4 197 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 A0A0J9YXV3 536 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 CD3EP07766 207 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 ZNF56Q15929 161 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 UNQ9165/PRO28630Q6UXU0 137 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 CLEC2BQ92478 149 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 EEF1AKMT3Q96AZ1 226 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 ZNF256Q9Y2P7 627 aaPredicted RBP5.06□□□□□ -1.6
VPS39-202ENST00000348544 ICOSQ9Y6W8 199 aa5.06□□□□□ -1.6
VPS39-202ENST00000348544 SPTBN2O15020 2390 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 A0A0J9YX75 114 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 IGHV1-69P01742 117 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 ADAMTSL4-AS1Q5T5F5 129 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 BDP1A6H8Y1 2624 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 MED13LQ71F56 2210 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 TRBV7-1A0A0A6YYK4 115 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 TRBV7-7A0A0K0K1E9 115 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 OOSP1A8MZH6 123 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 F5H697 171 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 OVOL1O14753 267 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 TRBV12-3P01733 135 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 MRPL23Q16540 153 aaKnown RBP5.05□□□□□ -1.6
VPS39-202ENST00000348544 DEFB121Q5J5C9 76 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 IGF2-ASQ6U949 168 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 LINC01560Q8TB33 94 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 PPDPFQ9H3Y8 114 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 VPREB3Q9UKI3 123 aa5.05□□□□□ -1.6
VPS39-202ENST00000348544 EP300Q09472 2414 aaPredicted RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 163.1 ms