RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 Q8N9W7 124 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 GLMPQ8WWB7 406 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 PHLDA3Q9Y5J5 127 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 IGHV4OR15-8A0A075B7B6 117 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 A0A087WW49 117 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 A0A096LNT2 108 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 P0DMU3 169 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 FAM231AP0DMU4 169 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 FAM231CP0DMU5 169 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 S100A4P26447 101 aaKnown RBP11.99□□□□□ -0.49
HMGA1-202ENST00000347617 RNF183Q96D59 192 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 CITED1Q99966 193 aa11.99□□□□□ -0.49
HMGA1-202ENST00000347617 MED13LQ71F56 2210 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 RNF223E7ERA6 249 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 J3QLI3 93 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 CFC1BP0CG36 223 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 CFC1P0CG37 223 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 ANKRD29Q8N6D5 301 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 LINC01356Q8N9X3 169 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 NRGNQ92686 78 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 C16orf92Q96LL3 132 aa11.98□□□□□ -0.49
HMGA1-202ENST00000347617 CHD6Q8TD26 2715 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 IGLV4-69A0A075B6H9 119 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 J3QKU1 62 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 NXPH4O95158 308 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 DEFB113Q30KQ7 82 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 OR10J6PQ8NGY7 276 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 FAM208BQ5VWN6 2430 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 LRRK2Q5S007 2527 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 A0A0B4J2C4 111 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 PLA2G2AP14555 144 aa11.97□□□□□ -0.49
HMGA1-202ENST00000347617 RPL39LQ96EH5 51 aaKnown RBP11.97□□□□□ -0.49
HMGA1-202ENST00000347617 SPG11Q96JI7 2443 aa11.96□□□□□ -0.49
HMGA1-202ENST00000347617 SLC25A20O43772 301 aa11.96□□□□□ -0.49
HMGA1-202ENST00000347617 CRYGDP07320 174 aa11.96□□□□□ -0.49
HMGA1-202ENST00000347617 APRG1Q8IVJ8 170 aa11.96□□□□□ -0.49
HMGA1-202ENST00000347617 PTH2Q96A98 100 aa11.96□□□□□ -0.49
HMGA1-202ENST00000347617 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.95□□□□□ -0.5
HMGA1-202ENST00000347617 IGIPA6NJ69 53 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 RHODO00212 210 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 VCYO14598 125 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 MGPP08493 103 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 ZFAND2AQ8N6M9 145 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 CCDC140Q96MF4 163 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 TACC2O95359 2948 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 ABCA2Q9BZC7 2435 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 LGALS3P17931 250 aaKnown RBP11.95□□□□□ -0.5
HMGA1-202ENST00000347617 GPHB5Q86YW7 130 aa11.95□□□□□ -0.5
HMGA1-202ENST00000347617 C14orf178Q8N769 122 aaPredicted RBP11.95□□□□□ -0.5
HMGA1-202ENST00000347617 IGHV3OR16-8A0A075B7F1 116 aa11.94□□□□□ -0.5
HMGA1-202ENST00000347617 SNCGO76070 127 aa11.94□□□□□ -0.5
HMGA1-202ENST00000347617 DUSP14O95147 198 aaKnown RBP11.94□□□□□ -0.5
HMGA1-202ENST00000347617 MRPL23Q16540 153 aaKnown RBP11.94□□□□□ -0.5
HMGA1-202ENST00000347617 PRR9Q5T870 116 aa11.94□□□□□ -0.5
HMGA1-202ENST00000347617 CLEC19AQ6UXS0 136 aa11.94□□□□□ -0.5
HMGA1-202ENST00000347617 KLHL30-AS1Q8NEE0 82 aa11.94□□□□□ -0.5
HMGA1-202ENST00000347617 KIR2DL4Q99706 377 aa11.94□□□□□ -0.5
HMGA1-202ENST00000347617 TP53TG1Q9Y2A0 90 aa11.94□□□□□ -0.5
HMGA1-202ENST00000347617 IGHV3-35A0A0C4DH35 117 aa11.93□□□□□ -0.5
HMGA1-202ENST00000347617 LEPROTO15243 131 aa11.93□□□□□ -0.5
HMGA1-202ENST00000347617 POLR2KP53803 58 aaKnown RBP11.93□□□□□ -0.5
HMGA1-202ENST00000347617 GAGE2BQ13066 116 aa11.93□□□□□ -0.5
HMGA1-202ENST00000347617 ATXN8Q156A1 80 aa11.93□□□□□ -0.5
HMGA1-202ENST00000347617 GAGE2EQ4V326 116 aa11.93□□□□□ -0.5
HMGA1-202ENST00000347617 GAGE2DQ9UEU5 116 aa11.93□□□□□ -0.5
HMGA1-202ENST00000347617 A0A0J9YX75 114 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 J3QQQ9 107 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 RPL13AP40429 203 aaKnown RBP11.92□□□□□ -0.5
HMGA1-202ENST00000347617 KRTAP10-9P60411 292 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 ECSCRQ19T08 205 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 ZNF876PQ49A33 203 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 C5orf56Q8N8D9 126 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 FAM19A4Q96LR4 140 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 MOB4Q9Y3A3 225 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 IGHV3-66A0A0C4DH42 116 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 FAM223BA6NKX1 122 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 TSHBP01222 138 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 IGHV3-33P01772 117 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 IGHV4-38-2P0DP08 117 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 CRIP2P52943 208 aaPredicted RBP11.92□□□□□ -0.5
HMGA1-202ENST00000347617 FAM223AQ8IWN6 122 aa11.92□□□□□ -0.5
HMGA1-202ENST00000347617 TRBV6-5A0A0K0K1A5 114 aa11.91□□□□□ -0.5
HMGA1-202ENST00000347617 ATP6V0E1O15342 81 aa11.91□□□□□ -0.5
HMGA1-202ENST00000347617 ANXA2RQ3ZCQ2 193 aa11.91□□□□□ -0.5
HMGA1-202ENST00000347617 C9JAW5 83 aa11.9□□□□□ -0.5
HMGA1-202ENST00000347617 RHOHQ15669 191 aa11.9□□□□□ -0.5
HMGA1-202ENST00000347617 SFTA2Q6UW10 78 aa11.9□□□□□ -0.5
HMGA1-202ENST00000347617 TMEM263Q8WUH6 116 aaKnown RBP11.9□□□□□ -0.5
HMGA1-202ENST00000347617 AMELXQ99217 191 aa11.9□□□□□ -0.5
HMGA1-202ENST00000347617 KIF25-AS1Q9Y6Z4 181 aa11.9□□□□□ -0.5
HMGA1-202ENST00000347617 SDHAF1A6NFY7 115 aa11.9□□□□□ -0.51
HMGA1-202ENST00000347617 ARL3P36405 182 aa11.9□□□□□ -0.51
HMGA1-202ENST00000347617 TMEM170BQ5T4T1 132 aa11.9□□□□□ -0.51
HMGA1-202ENST00000347617 BRD3OSQ6XYD6 125 aa11.9□□□□□ -0.51
HMGA1-202ENST00000347617 USP9YO00507 2555 aaPredicted RBP11.89□□□□□ -0.51
HMGA1-202ENST00000347617 A6NDX4 124 aa11.89□□□□□ -0.51
HMGA1-202ENST00000347617 BRI3O95415 125 aa11.89□□□□□ -0.51
HMGA1-202ENST00000347617 TRBV27A0A0K0K1C4 114 aa11.88□□□□□ -0.51
HMGA1-202ENST00000347617 AVPP01185 164 aa11.88□□□□□ -0.51
HMGA1-202ENST00000347617 NDUFV3P56181 108 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms