RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FNDC10F2Z333 226 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 LELP1Q5T871 98 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 IGLV3-1P01715 115 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 CRYGBP07316 175 aa6.31□□□□□ -1.4
HMGB1-203ENST00000341423 RPL23P62829 140 aaKnown RBP6.31□□□□□ -1.4
HMGB1-203ENST00000341423 RBM3P98179 157 aaKnown RBP6.31□□□□□ -1.4
HMGB1-203ENST00000341423 A0A087X0M5 115 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 A0A1B0GX30 115 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 H3BRN7 92 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 A0A0A6YYD4 124 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 PUSL1Q8N0Z8 303 aaKnown RBP6.3□□□□□ -1.4
HMGB1-203ENST00000341423 BAALCQ8WXS3 180 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 ZNF492Q9P255 531 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 TMA7Q9Y2S6 64 aaKnown RBP6.3□□□□□ -1.4
HMGB1-203ENST00000341423 UNC79Q9P2D8 2635 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 LOC107984156A0A0G2JMH3 177 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 LEPROTL1O95214 131 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 Q6ZTI0 123 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 ARL17AQ8IVW1 177 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 LINC00205P59089 165 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 MORN5Q5VZ52 161 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 FAM19A5Q7Z5A7 132 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-203ENST00000341423 LINC01551Q86U37 167 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 ZNF414Q96IQ9 312 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 GFI1Q99684 422 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 TIMM21Q9BVV7 248 aa6.3□□□□□ -1.4
HMGB1-203ENST00000341423 TMEM213A2RRL7 107 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 LGALS9CQ6DKI2 356 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 TEX22C9J3V5 150 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 K7EQG2 157 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 RPL37AP61513 92 aaKnown RBP6.29□□□□□ -1.4
HMGB1-203ENST00000341423 C18orf65Q6ZTR6 163 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 NIT1Q86X76 327 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 ARID2Q68CP9 1835 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 A0A096LNI7 61 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 ZNF479Q96JC4 524 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 TRBV19A0A075B6N1 114 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 J3QRE1 110 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 K7EIL1 84 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 TCL1BO95988 128 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 UNQ9165/PRO28630Q6UXU0 137 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 TSC2P49815 1807 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 PCP2Q8IVA1 136 aa6.29□□□□□ -1.4
HMGB1-203ENST00000341423 RBM38Q9H0Z9 239 aaKnown RBP6.29□□□□□ -1.4
HMGB1-203ENST00000341423 LAGE3Q14657 143 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 MSMPQ1L6U9 139 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 ZFP2Q6ZN57 461 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 CBLN2Q8IUK8 224 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 NTN5Q8WTR8 489 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-203ENST00000341423 SIGMAR1Q99720 223 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 IGLC7A0M8Q6 106 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 MLANAQ16655 118 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 DYNAPQ8N1N2 210 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 ZNF625Q96I27 306 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-203ENST00000341423 CLUHP3Q96NS8 147 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 PTPRDP23468 1912 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 LTAP01374 205 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 C1orf137Q5JT78 98 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 ZNF506Q5JVG8 444 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 LINC00518Q8N0U6 118 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 NBDYA0A0U1RRE5 68 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 INAFM2P0DMQ5 153 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 BOD1L2Q8IYS8 172 aa6.28□□□□□ -1.4
HMGB1-203ENST00000341423 LINC00269Q8N2A0 174 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 TMEM238C9JI98 176 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 SAMD5Q5TGI4 173 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 PARD6GQ9BYG4 376 aaPredicted RBP6.27□□□□□ -1.41
HMGB1-203ENST00000341423 HEATR5AQ86XA9 2040 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 ESDP10768 282 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 FOXA3P55318 350 aaPredicted RBP6.27□□□□□ -1.41
HMGB1-203ENST00000341423 POU2AF1Q16633 256 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 ZC2HC1BQ5TFG8 222 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 Q6ZS49 121 aa6.27□□□□□ -1.41
HMGB1-203ENST00000341423 IGKV1D-37A0A075B6S9 117 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 OVOL2Q9BRP0 275 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 CHTOPQ9Y3Y2 248 aaKnown RBP6.26□□□□□ -1.41
HMGB1-203ENST00000341423 CCL25O15444 150 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 EBI3Q14213 229 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 STPG4Q8N801 248 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 WFDC9Q8NEX5 89 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 SS18L2Q9UHA2 77 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 HIGD1CA8MV81 97 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 IGLV2-14P01704 120 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 CRYBA4P53673 196 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 PET117Q6UWS5 81 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 Q8N1Y9 231 aa6.26□□□□□ -1.41
HMGB1-203ENST00000341423 LINC00299Q6ZSB3 139 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 MAPKAPK5-AS1Q8N8E1 139 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 CHCHD7Q9BUK0 85 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 CYTL1Q9NRR1 136 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 IGKV1D-8A0A087WSZ0 117 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 FUSP35637 526 aaKnown RBP eCLIP6.25□□□□□ -1.41
HMGB1-203ENST00000341423 AGPAT4-IT1Q9H0P7 198 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 NCR2O95944 276 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 NMBP08949 121 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 LINC01556Q5JQF7 62 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 SLC25A2Q9BXI2 301 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 TET2Q6N021 2002 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-203ENST00000341423 PLAC8L1A1L4L8 177 aa6.25□□□□□ -1.41
HMGB1-203ENST00000341423 GNRH2O43555 120 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms