RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 GSN-AS1Q9NRJ2 163 aa9.76□□□□□ -0.85
HMGB1-202ENST00000339872 GTSCR1Q86UQ5 136 aa9.76□□□□□ -0.85
HMGB1-202ENST00000339872 RPL39LQ96EH5 51 aaKnown RBP9.76□□□□□ -0.85
HMGB1-202ENST00000339872 ATRQ13535 2644 aa9.75□□□□□ -0.85
HMGB1-202ENST00000339872 DEFB125Q8N687 156 aa9.75□□□□□ -0.85
HMGB1-202ENST00000339872 POM121L12Q8N7R1 296 aa9.75□□□□□ -0.85
HMGB1-202ENST00000339872 A0A096LNJ9 63 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 F5H697 171 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 BTF3P20290 206 aaKnown RBP9.74□□□□□ -0.85
HMGB1-202ENST00000339872 Q8N8P6 123 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 Q8N976 141 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 ZNF56Q15929 161 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 SUMO4Q6EEV6 95 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 C11orf72Q8NBR9 251 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 HSPB8Q9UJY1 196 aa9.74□□□□□ -0.85
HMGB1-202ENST00000339872 IGLV2-18A0A075B6J9 118 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 PRSS47A8MTI9 375 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 M0R2P5 195 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 HBDP02042 147 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 GIG44P09565 113 aaPredicted RBP9.73□□□□□ -0.85
HMGB1-202ENST00000339872 TMEM70Q9BUB7 260 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 VWFP04275 2813 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 LINC01546A6NGU7 62 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 CRYGDP07320 174 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 AZU1P20160 251 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 SUMO2P61956 95 aaKnown RBP9.73□□□□□ -0.85
HMGB1-202ENST00000339872 SMIM2Q9BVW6 85 aa9.73□□□□□ -0.85
HMGB1-202ENST00000339872 PPP1R17O96001 155 aa9.72□□□□□ -0.85
HMGB1-202ENST00000339872 MORN3Q6PF18 240 aaPredicted RBP9.72□□□□□ -0.85
HMGB1-202ENST00000339872 C20orf78Q9BR46 151 aa9.72□□□□□ -0.85
HMGB1-202ENST00000339872 MCRIP2Q9BUT9 160 aaKnown RBP9.72□□□□□ -0.85
HMGB1-202ENST00000339872 C1QTNF4Q9BXJ3 329 aa9.72□□□□□ -0.85
HMGB1-202ENST00000339872 MAP1LC3CQ9BXW4 147 aa9.72□□□□□ -0.85
HMGB1-202ENST00000339872 GOLT1BQ9Y3E0 138 aa9.72□□□□□ -0.85
HMGB1-202ENST00000339872 H0Y8G0 127 aa9.71□□□□□ -0.85
HMGB1-202ENST00000339872 SYS1-DBNDD2H3BUS1 97 aa9.71□□□□□ -0.85
HMGB1-202ENST00000339872 TCAPO15273 167 aa9.71□□□□□ -0.85
HMGB1-202ENST00000339872 TEX43Q6ZNM6 134 aa9.71□□□□□ -0.85
HMGB1-202ENST00000339872 SPXQ9BT56 116 aa9.71□□□□□ -0.85
HMGB1-202ENST00000339872 ZNF747Q9BV97 191 aa9.71□□□□□ -0.85
HMGB1-202ENST00000339872 PRO1933Q9H354 126 aa9.71□□□□□ -0.85
HMGB1-202ENST00000339872 MRPL16Q9NX20 251 aaKnown RBP9.71□□□□□ -0.85
HMGB1-202ENST00000339872 IGLL1P15814 213 aa9.71□□□□□ -0.86
HMGB1-202ENST00000339872 SPATA12Q7Z6I5 190 aa9.71□□□□□ -0.86
HMGB1-202ENST00000339872 ZNF664Q8N3J9 261 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 A8MWV9 139 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 FCER1GP30273 86 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 LAGE3Q14657 143 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 PRIMA1Q86XR5 153 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 WFDC9Q8NEX5 89 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 RNASE8Q8TDE3 154 aaKnown RBP9.7□□□□□ -0.86
HMGB1-202ENST00000339872 TMEM158Q8WZ71 300 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 ST20Q9HBF5 79 aa9.7□□□□□ -0.86
HMGB1-202ENST00000339872 IGHV3-73A0A0B4J1V6 119 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 TSTD3H0UI37 97 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 PKIAP61925 76 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 PIK3CD-AS1Q5SR53 167 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 ATOH7Q8N100 152 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 C3orf56Q8N813 242 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 CSNK1G2-AS1Q8NCQ2 148 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 TMEM263Q8WUH6 116 aaKnown RBP9.69□□□□□ -0.86
HMGB1-202ENST00000339872 PTH2Q96A98 100 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 VAMP8Q9BV40 100 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 CSTL1Q9H114 145 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 NACAE9PAV3 2078 aa9.69□□□□□ -0.86
HMGB1-202ENST00000339872 NOTCH3Q9UM47 2321 aa9.68□□□□□ -0.86
HMGB1-202ENST00000339872 C20orf202A1L168 122 aa9.68□□□□□ -0.86
HMGB1-202ENST00000339872 M0QY20 66 aa9.68□□□□□ -0.86
HMGB1-202ENST00000339872 NEGR1Q7Z3B1 354 aa9.68□□□□□ -0.86
HMGB1-202ENST00000339872 IL17DQ8TAD2 202 aa9.68□□□□□ -0.86
HMGB1-202ENST00000339872 C18orf15Q96N68 181 aa9.68□□□□□ -0.86
HMGB1-202ENST00000339872 PAM16Q9Y3D7 125 aa9.68□□□□□ -0.86
HMGB1-202ENST00000339872 PET117Q6UWS5 81 aa9.67□□□□□ -0.86
HMGB1-202ENST00000339872 CFAP126Q5VTH2 177 aa9.67□□□□□ -0.86
HMGB1-202ENST00000339872 TRGV1A0A0A0MS02 117 aa9.66□□□□□ -0.86
HMGB1-202ENST00000339872 NUDT3O95989 172 aa9.66□□□□□ -0.86
HMGB1-202ENST00000339872 ORMDL2Q53FV1 153 aa9.66□□□□□ -0.86
HMGB1-202ENST00000339872 UFSP1Q6NVU6 142 aa9.66□□□□□ -0.86
HMGB1-202ENST00000339872 ZNF705AQ6ZN79 300 aaPredicted RBP9.66□□□□□ -0.86
HMGB1-202ENST00000339872 IFI27L1Q96BM0 104 aa9.66□□□□□ -0.86
HMGB1-202ENST00000339872 SDHAF1A6NFY7 115 aa9.66□□□□□ -0.86
HMGB1-202ENST00000339872 C16orf74Q96GX8 76 aa9.66□□□□□ -0.86
HMGB1-202ENST00000339872 TRBV6-5A0A0K0K1A5 114 aa9.65□□□□□ -0.86
HMGB1-202ENST00000339872 K7EMI3 77 aa9.65□□□□□ -0.86
HMGB1-202ENST00000339872 POLR2KP53803 58 aaKnown RBP9.65□□□□□ -0.86
HMGB1-202ENST00000339872 RPL32P62910 135 aaKnown RBP9.65□□□□□ -0.86
HMGB1-202ENST00000339872 RRN3P1Q2M238 152 aa9.65□□□□□ -0.86
HMGB1-202ENST00000339872 C12orf54Q6X4T0 127 aa9.65□□□□□ -0.86
HMGB1-202ENST00000339872 PMCHL2Q9BQD1 86 aa9.65□□□□□ -0.86
HMGB1-202ENST00000339872 KIR2DL5BA0A0G2JN68 375 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 KIR2DL5BA0A0G2JPC4 375 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 H7C1H1 209 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 RHODO00212 210 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 WIPF1O43516 503 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 SHISA2Q6UWI4 295 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 KIR2DL5AQ8N109 375 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 DEFB104AQ8WTQ1 72 aa9.65□□□□□ -0.87
HMGB1-202ENST00000339872 FBN1P35555 2871 aaKnown RBP9.65□□□□□ -0.87
HMGB1-202ENST00000339872 LINC00587B1AMM8 73 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 RS1O15537 224 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms