RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 F8VRH5 84 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 NDUFA3O95167 84 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 DUX4L9Q6RFH8 374 aaPredicted RBP4.26□□□□□ -1.73
CSDE1-202ENST00000339438 SDIM1Q6ZPB5 146 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 ARL17AQ8IVW1 177 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 C10orf126Q8N4M7 172 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 C15orf53Q8NAA6 179 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 NAV2Q8IVL1 2488 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 A0A1B0GX51 115 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 OOSP1A8MZH6 123 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 SRRM5B3KS81 715 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 LGALS9O00182 355 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 LHBP01229 141 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 TEX36Q5VZQ5 186 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 CEMP1Q6PRD7 247 aaPredicted RBP4.26□□□□□ -1.73
CSDE1-202ENST00000339438 NCBP2LA6PVI3 153 aaKnown RBP4.26□□□□□ -1.73
CSDE1-202ENST00000339438 OXTP01178 125 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 CRYGDP07320 174 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 TNFAIP6P98066 277 aaPredicted RBP4.26□□□□□ -1.73
CSDE1-202ENST00000339438 SRSF2Q01130 221 aaKnown RBP4.26□□□□□ -1.73
CSDE1-202ENST00000339438 MRPL23Q16540 153 aaKnown RBP4.26□□□□□ -1.73
CSDE1-202ENST00000339438 IL17RELQ6ZVW7 336 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 TMEM167AQ8TBQ9 72 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 TPPP3Q9BW30 176 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 MRPL20Q9BYC9 149 aaKnown RBP4.26□□□□□ -1.73
CSDE1-202ENST00000339438 CYSTM1Q9H1C7 97 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 TRAV8-2A0A0B4J237 113 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 C2orf48Q96LS8 159 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 TPSG1Q9NRR2 321 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 RPUSD1Q9UJJ7 312 aaKnown RBP4.25□□□□□ -1.73
CSDE1-202ENST00000339438 SONP18583 2426 aaKnown RBP4.25□□□□□ -1.73
CSDE1-202ENST00000339438 P0DMU3 169 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 FAM231AP0DMU4 169 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 FAM231CP0DMU5 169 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 GLRXP35754 106 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 LRRC75A-AS1Q8N1F1 130 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 TMEM263Q8WUH6 116 aaKnown RBP4.25□□□□□ -1.73
CSDE1-202ENST00000339438 M0R3E3 92 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 SCGB2A1O75556 95 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 NDUFA7O95182 113 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 CD3EP07766 207 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 TSPEAR-AS2P59090 65 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 C1orf162Q8NEQ5 155 aaPredicted RBP4.25□□□□□ -1.73
CSDE1-202ENST00000339438 NTN5Q8WTR8 489 aaPredicted RBP4.25□□□□□ -1.73
CSDE1-202ENST00000339438 PRADC1Q9BSG0 188 aa4.25□□□□□ -1.73
CSDE1-202ENST00000339438 FLNBO75369 2602 aaKnown RBP4.25□□□□□ -1.73
CSDE1-202ENST00000339438 H7C1H1 209 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 TGFAP01135 160 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 SCGB1C2P0DMR2 95 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 DLX1P56177 255 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 RPS28P62857 69 aaKnown RBP4.24□□□□□ -1.73
CSDE1-202ENST00000339438 LYPD1Q8N2G4 141 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 KLHL30-AS1Q8NEE0 82 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 TMEM190Q8WZ59 177 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 CCL13Q99616 98 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 UBTD1Q9HAC8 227 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 DNAH10Q8IVF4 4471 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 DNAH8Q96JB1 4490 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 IGLV4-69A0A075B6H9 119 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 C9JAW5 83 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 IGHV3-33P01772 117 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 ERHP84090 104 aaKnown RBP4.24□□□□□ -1.73
CSDE1-202ENST00000339438 AAMDCQ9H7C9 122 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 NGBQ9NPG2 151 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 KLK5Q9Y337 293 aaPredicted RBP4.24□□□□□ -1.73
CSDE1-202ENST00000339438 FAM240AA0A1B0GVK7 77 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 E7EQL1 145 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 H3BRN7 92 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 H3BVH4 76 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 TRGV3P03979 118 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 SLC25A29Q8N8R3 303 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 NPFFO15130 113 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 IGHV1-46P01743 117 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 LAGE3Q14657 143 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 Q5XG85 94 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 C14orf178Q8N769 122 aaPredicted RBP4.24□□□□□ -1.73
CSDE1-202ENST00000339438 FAM216BQ8N7L0 139 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 TOMM6Q96B49 74 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 HIGD1AQ9Y241 93 aa4.24□□□□□ -1.73
CSDE1-202ENST00000339438 IGLV3-9A0A075B6K5 115 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 TSHBP01222 138 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 IGKV1-17P01599 117 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 ERCC8Q13216 396 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 SMCR5Q8TEV8 140 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 LINC00526Q96FQ7 95 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 SHANK2-AS3Q9BTD1 123 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 SETD2Q9BYW2 2564 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-202ENST00000339438 CRYGBP07316 175 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 HLA-DMBP28068 263 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 HERVK_113P63121 156 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 C3orf22Q8N5N4 141 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 PRO1854Q9UHT4 67 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 MAST4O15021 2626 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 RBAKDNA6NC62 111 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 ZNF815PA8K554 130 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 I3L2K1 104 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 HIST1H4AP62805 103 aaKnown RBP4.23□□□□□ -1.73
CSDE1-202ENST00000339438 RNASE6Q93091 150 aaKnown RBP4.23□□□□□ -1.73
CSDE1-202ENST00000339438 ONECUT1Q9UBC0 465 aa4.23□□□□□ -1.73
CSDE1-202ENST00000339438 ACANP16112 2415 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms