RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 UBE2DNLQ8IWF7 75 aa11.03□□□□□ -0.64
CLN3-201ENST00000333496 IGHV3-16A0A0C4DH30 117 aa11.02□□□□□ -0.64
CLN3-201ENST00000333496 FBLL1A6NHQ2 334 aaKnown RBP11.02□□□□□ -0.64
CLN3-201ENST00000333496 K7EN84 100 aa11.02□□□□□ -0.64
CLN3-201ENST00000333496 GATCO43716 136 aaKnown RBP11.02□□□□□ -0.64
CLN3-201ENST00000333496 PKIAP61925 76 aa11.02□□□□□ -0.64
CLN3-201ENST00000333496 OSTCQ9NRP0 149 aa11.02□□□□□ -0.64
CLN3-201ENST00000333496 ERVFC1-1P60608 527 aa11.02□□□□□ -0.65
CLN3-201ENST00000333496 SAPCD1Q5SSQ6 148 aa11.02□□□□□ -0.65
CLN3-201ENST00000333496 VSIG2Q96IQ7 327 aa11.02□□□□□ -0.65
CLN3-201ENST00000333496 SPXQ9BT56 116 aa11.02□□□□□ -0.65
CLN3-201ENST00000333496 UBE2G1P62253 170 aa11.01□□□□□ -0.65
CLN3-201ENST00000333496 CDPF1Q6NVV7 123 aa11.01□□□□□ -0.65
CLN3-201ENST00000333496 RASL10AQ92737 203 aa11.01□□□□□ -0.65
CLN3-201ENST00000333496 FMC1Q96HJ9 113 aa11.01□□□□□ -0.65
CLN3-201ENST00000333496 KCNS1Q96KK3 526 aa11.01□□□□□ -0.65
CLN3-201ENST00000333496 H3BNG1 76 aa11□□□□□ -0.65
CLN3-201ENST00000333496 IGHV3-53P01767 116 aa11□□□□□ -0.65
CLN3-201ENST00000333496 MT-ND6P03923 174 aa11□□□□□ -0.65
CLN3-201ENST00000333496 Q86TA4 180 aa11□□□□□ -0.65
CLN3-201ENST00000333496 V9GYV3 84 aa11□□□□□ -0.65
CLN3-201ENST00000333496 IGLV2-18A0A075B6J9 118 aa10.99□□□□□ -0.65
CLN3-201ENST00000333496 M0R2N4 97 aa10.99□□□□□ -0.65
CLN3-201ENST00000333496 GZMBP10144 247 aa10.99□□□□□ -0.65
CLN3-201ENST00000333496 WDR73Q6P4I2 378 aa10.99□□□□□ -0.65
CLN3-201ENST00000333496 BAGE2Q86Y30 109 aa10.99□□□□□ -0.65
CLN3-201ENST00000333496 IGLV2-8P01709 118 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 FHL2Q14192 279 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 IQCJQ1A5X6 159 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 LINC00588Q9Y4M8 146 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 FAT2Q9NYQ8 4349 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 TRBV6-1A0A0K0K1D8 114 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 M0R2P5 195 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 CRIP1P50238 77 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 ZNF479Q96JC4 524 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 GNB1LQ9BYB4 327 aa10.98□□□□□ -0.65
CLN3-201ENST00000333496 MRPL18Q9H0U6 180 aaKnown RBP10.98□□□□□ -0.65
CLN3-201ENST00000333496 A0A096LPF7 62 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 IGKV3D-20A0A0C4DH25 116 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 LTAP01374 205 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 CCL18P55774 89 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 Q6ZR54 194 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 COX8CQ7Z4L0 72 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 ZNRF2Q8NHG8 242 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 SMIM12Q96EX1 92 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 ZC2HC1AQ96GY0 325 aa10.97□□□□□ -0.65
CLN3-201ENST00000333496 FABP5P3A8MUU1 101 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 MGST1P10620 155 aaKnown RBP10.96□□□□□ -0.65
CLN3-201ENST00000333496 ESDP10768 282 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 CRYBA4P53673 196 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 ESRGQ1W209 222 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 FAM231DQ6ZW35 169 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 NHLRC2Q8NBF2 726 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 C9orf85Q96MD7 179 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 PRO0255Q9UI72 69 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 ZFP30Q9Y2G7 519 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 DNAH17Q9UFH2 4485 aa10.96□□□□□ -0.65
CLN3-201ENST00000333496 RNASE3P12724 160 aaKnown RBP10.95□□□□□ -0.66
CLN3-201ENST00000333496 DDTP30046 118 aa10.95□□□□□ -0.66
CLN3-201ENST00000333496 HHLA3Q9XRX5 114 aa10.95□□□□□ -0.66
CLN3-201ENST00000333496 TRAV4A0A0B4J268 109 aa10.95□□□□□ -0.66
CLN3-201ENST00000333496 PAX4O43316 350 aa10.95□□□□□ -0.66
CLN3-201ENST00000333496 RASL11AQ6T310 242 aa10.95□□□□□ -0.66
CLN3-201ENST00000333496 MLST8Q9BVC4 326 aa10.95□□□□□ -0.66
CLN3-201ENST00000333496 HECTD4Q9Y4D8 3996 aa10.95□□□□□ -0.66
CLN3-201ENST00000333496 SMIM27A0A1W2PRY6 76 aa10.94□□□□□ -0.66
CLN3-201ENST00000333496 HLA-DQA1P01909 254 aa10.94□□□□□ -0.66
CLN3-201ENST00000333496 Q0VG73 95 aa10.94□□□□□ -0.66
CLN3-201ENST00000333496 SLAQ13239 276 aa10.94□□□□□ -0.66
CLN3-201ENST00000333496 TRGV4A0A0C4DH28 118 aa10.93□□□□□ -0.66
CLN3-201ENST00000333496 ZNF575Q86XF7 245 aa10.93□□□□□ -0.66
CLN3-201ENST00000333496 OR4C5Q8NGB2 326 aa10.93□□□□□ -0.66
CLN3-201ENST00000333496 RNASE7Q9H1E1 156 aaKnown RBP10.93□□□□□ -0.66
CLN3-201ENST00000333496 RTL8CO15255 209 aa10.92□□□□□ -0.66
CLN3-201ENST00000333496 SH2D1AO60880 128 aa10.92□□□□□ -0.66
CLN3-201ENST00000333496 ZNF876PQ49A33 203 aa10.92□□□□□ -0.66
CLN3-201ENST00000333496 OR10J3Q5JRS4 329 aa10.92□□□□□ -0.66
CLN3-201ENST00000333496 BIRC6Q9NR09 4857 aa10.92□□□□□ -0.66
CLN3-201ENST00000333496 ORM1P02763 201 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 RAB4BP61018 213 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 FAM162BQ5T6X4 162 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 NAT8BQ9UHF3 227 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 ICOSQ9Y6W8 199 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 LBHQ53QV2 105 aaPredicted RBP10.91□□□□□ -0.66
CLN3-201ENST00000333496 PRR27Q6MZM9 219 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 TMEM136Q6ZRR5 245 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 PTH2Q96A98 100 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 C14orf144Q96I85 54 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 UPK3BQ9BT76 320 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 Q9H8V8 135 aa10.91□□□□□ -0.66
CLN3-201ENST00000333496 NBDYA0A0U1RRE5 68 aa10.9□□□□□ -0.66
CLN3-201ENST00000333496 GRIFINA4D1Z8 144 aa10.9□□□□□ -0.66
CLN3-201ENST00000333496 RS1O15537 224 aa10.9□□□□□ -0.66
CLN3-201ENST00000333496 CFAP126Q5VTH2 177 aa10.9□□□□□ -0.66
CLN3-201ENST00000333496 BAGE3Q86Y29 109 aa10.9□□□□□ -0.66
CLN3-201ENST00000333496 PRO1933Q9H354 126 aa10.9□□□□□ -0.66
CLN3-201ENST00000333496 MRPS16Q9Y3D3 137 aaKnown RBP10.9□□□□□ -0.66
CLN3-201ENST00000333496 K7EQD1 137 aa10.89□□□□□ -0.67
CLN3-201ENST00000333496 MRPL23Q16540 153 aaKnown RBP10.89□□□□□ -0.67
CLN3-201ENST00000333496 ZNF664Q8N3J9 261 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms