RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF141Q15928 474 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 MPV17LQ2QL34 196 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 FAM229BQ4G0N7 80 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM78Q5T7P6 136 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 AGTRAPQ6RW13 159 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 LCN15Q6UWW0 184 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 AMTNQ6UX39 209 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 SPATA12Q7Z6I5 190 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 OOSP2Q86WS3 158 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-201ENST00000326004 OR51A4Q8NGJ6 313 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 OR51A2Q8NGJ7 313 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 MUC7Q8TAX7 377 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 ZCCHC13Q8WW36 166 aaKnown RBP1.52□□□□□ -2.17
HMGB1-201ENST00000326004 AP1S3Q96PC3 154 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 SDF2Q99470 211 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 HSPB9Q9BQS6 159 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 DOHHQ9BU89 302 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM126AQ9H061 195 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 RNASE7Q9H1E1 156 aaKnown RBP1.52□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM106BQ9NUM4 274 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 AK3Q9UIJ7 227 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 KLK5Q9Y337 293 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-201ENST00000326004 KIAA1549LQ6ZVL6 1849 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 DIDO1Q9BTC0 2240 aaKnown RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 BAZ2BQ9UIF8 2168 aaKnown RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 TRAV36DV7A0A075B6V5 113 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 hCG_1818297A0A087WSY0 165 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 MUC21A0A0G2JKD1 596 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 MUC21A0A140T8X8 626 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 LOC102725191A0A1B0GVB3 256 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 hADV38S2A0JD32 116 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 C9JAW5 83 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 GABARAPH6UMI1 98 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 J3KT08 172 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 J3QR89 54 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 SDCBPO00560 298 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 UBE2L6O14933 153 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 SYNGR2O43760 224 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 LY6HO94772 140 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 NDUFB6O95139 128 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 NDUFB2O95178 105 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 LINC00694P0DN24 101 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 SLC25A6P12236 298 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 PIPP12273 146 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF22P17026 224 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 SRP14P37108 136 aaKnown RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 POLR2JP52435 117 aaKnown RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 RBM11P57052 281 aaKnown RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 KRTDAPP60985 99 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 INSL4Q14641 139 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 ADIRFQ15847 76 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 MEIG1Q5JSS6 88 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 GLYATL3Q5SZD4 288 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 BVES-AS1Q5T3Y7 98 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 TEX36Q5VZQ5 186 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 NOXRED1Q6NXP6 359 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 FOXI2Q6ZQN5 318 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 RPS27LQ71UM5 84 aaKnown RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 TTC9CQ8N5M4 171 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 ANKRD29Q8N6D5 301 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF439Q8NDP4 499 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 OR10P1Q8NGE3 313 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 OR5A1Q8NGJ0 315 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 SLC25A40Q8TBP6 338 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 RPS4Y2Q8TD47 263 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 SMIM4Q8WVI0 70 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 PP6455Q8WZ26 134 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 IGF2BP2-AS1Q96M15 143 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 NMNAT3Q96T66 252 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 GPER1Q99527 375 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM147Q9BVK8 224 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 DPY30Q9C005 99 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 WDR61Q9GZS3 305 aaKnown RBP1.51□□□□□ -2.17
HMGB1-201ENST00000326004 CHST6Q9GZX3 395 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 SMDT1Q9H4I9 107 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 PRTFDC1Q9NRG1 225 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 HIGD1AQ9Y241 93 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 CYSLTR1Q9Y271 337 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 HS3ST2Q9Y278 367 aa1.51□□□□□ -2.17
HMGB1-201ENST00000326004 ANK1P16157 1881 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 TENM3Q9P273 2699 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 TRBV20-1A0A075B6N2 111 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 TRGV10A0A0A0MS01 117 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 IGHV3-73A0A0B4J1V6 119 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 C17orf98A8MV24 154 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 FNDC10F2Z333 226 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 H3BUT2 72 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 PSCAO43653 123 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 IGHV1-69P01742 117 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 PRH1P02810 166 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 SRP19P09132 144 aaKnown RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 LINC00032P0C843 101 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 RPS4Y1P22090 263 aaKnown RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 TAS2R20P59543 309 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 YPEL3P61236 119 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 MSMO1Q15800 293 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 RPL7L1Q6DKI1 246 aaKnown RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF322Q6U7Q0 402 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 HRCT1Q6UXD1 115 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms