RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 WDR87Q6ZQQ6 2873 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 IGKV1OR2-108A0A075B7D4 117 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 LINC01619G3V211 115 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 IGLV2-14P01704 120 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 LINC00643Q86TS7 51 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 RNF114Q9Y508 228 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 EML6Q6ZMW3 1958 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 KMT2EQ8IZD2 1858 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 LGALS9O00182 355 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 OTOGLQ3ZCN5 2332 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 ZNF561-AS1K7EIQ3 104 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 TMEM131Q92545 1883 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.92□□□□□ -0.98
VPS39-201ENST00000318006 IGKV2-29A2NJV5 120 aaPredicted RBP8.92□□□□□ -0.98
VPS39-201ENST00000318006 C11orf86A6NJI1 115 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 SPRY2O43597 315 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 TCL1BO95988 128 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 ODF3L1Q8IXM7 274 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 TIMM17AQ99595 171 aa8.92□□□□□ -0.98
VPS39-201ENST00000318006 NOTCH2Q04721 2471 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 K7EIM0 57 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 CRYGBP07316 175 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 TM2D2Q9BX73 214 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 TP53TG3Q9ULZ0 132 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 H3BUA1 57 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 IGLV2-8P01709 118 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 CFHR3Q02985 330 aa8.91□□□□□ -0.98
VPS39-201ENST00000318006 CENPVL3A0A0U1RRI6 287 aa8.9□□□□□ -0.98
VPS39-201ENST00000318006 MSMPQ1L6U9 139 aa8.9□□□□□ -0.98
VPS39-201ENST00000318006 HOXD3P31249 432 aaPredicted RBP8.9□□□□□ -0.98
VPS39-201ENST00000318006 ADORA2A-AS1P86434 159 aa8.9□□□□□ -0.98
VPS39-201ENST00000318006 LOXL1Q08397 574 aaPredicted RBP8.9□□□□□ -0.98
VPS39-201ENST00000318006 GDF5OSQ5U4N7 250 aa8.9□□□□□ -0.98
VPS39-201ENST00000318006 Q8N1Y9 231 aa8.9□□□□□ -0.98
VPS39-201ENST00000318006 SND1-IT1Q9HBX3 110 aa8.9□□□□□ -0.98
VPS39-201ENST00000318006 ELANEP08246 267 aa8.9□□□□□ -0.99
VPS39-201ENST00000318006 CLEC2BQ92478 149 aa8.9□□□□□ -0.99
VPS39-201ENST00000318006 hADV29S1A0JD25 119 aa8.89□□□□□ -0.99
VPS39-201ENST00000318006 NKAPP1Q8N9T2 125 aa8.89□□□□□ -0.99
VPS39-201ENST00000318006 NPBQ8NG41 125 aa8.89□□□□□ -0.99
VPS39-201ENST00000318006 ZNF503Q96F45 646 aa8.89□□□□□ -0.99
VPS39-201ENST00000318006 TP73-AS1Q9UF72 201 aa8.89□□□□□ -0.99
VPS39-201ENST00000318006 TNRC6AQ8NDV7 1962 aaKnown RBP8.89□□□□□ -0.99
VPS39-201ENST00000318006 UQCRQO14949 82 aa8.89□□□□□ -0.99
VPS39-201ENST00000318006 IGHV4-61A0A0C4DH41 118 aa8.89□□□□□ -0.99
VPS39-201ENST00000318006 RPL39P62891 51 aaKnown RBP8.89□□□□□ -0.99
VPS39-201ENST00000318006 RITA1Q96K30 269 aa8.88□□□□□ -0.99
VPS39-201ENST00000318006 P0C879 139 aa8.88□□□□□ -0.99
VPS39-201ENST00000318006 IGHV7-81A0A0B4J1V7 117 aa8.88□□□□□ -0.99
VPS39-201ENST00000318006 C5orf47Q569G3 176 aa8.88□□□□□ -0.99
VPS39-201ENST00000318006 JMJD7-PLA2G4BH0Y9G9 81 aa8.88□□□□□ -0.99
VPS39-201ENST00000318006 J3QKU1 62 aa8.87□□□□□ -0.99
VPS39-201ENST00000318006 DEFB112Q30KQ8 113 aa8.87□□□□□ -0.99
VPS39-201ENST00000318006 IGLV11-55A0A075B6I3 123 aa8.87□□□□□ -0.99
VPS39-201ENST00000318006 IGLV1-47P01700 117 aa8.87□□□□□ -0.99
VPS39-201ENST00000318006 Q8NA96 180 aa8.87□□□□□ -0.99
VPS39-201ENST00000318006 MBD6Q96DN6 1003 aa8.87□□□□□ -0.99
VPS39-201ENST00000318006 IGHV4-59P01825 116 aa8.87□□□□□ -0.99
VPS39-201ENST00000318006 WI2-2373I1.2A0A1W2PRP0 233 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 FBXL19-AS1Q494R0 122 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 ZNF295-AS1Q8N0V1 137 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 TRAV4A0A0B4J268 109 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 BUB3O43684 328 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 CTSGP08311 255 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 DAND5Q8N907 189 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 VPREB3Q9UKI3 123 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 PCNX3Q9H6A9 2034 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 MED14OSP0DP75 135 aa8.86□□□□□ -0.99
VPS39-201ENST00000318006 MRPL36Q9P0J6 103 aaKnown RBP8.85□□□□□ -0.99
VPS39-201ENST00000318006 OPRPNQ99935 248 aaPredicted RBP8.85□□□□□ -0.99
VPS39-201ENST00000318006 IGHV4-30-2A0A087WSY4 118 aa8.85□□□□□ -0.99
VPS39-201ENST00000318006 PRAC2D3DTV9 90 aa8.85□□□□□ -0.99
VPS39-201ENST00000318006 LINC00322Q6ZN03 302 aaPredicted RBP8.85□□□□□ -0.99
VPS39-201ENST00000318006 PRR14LQ5THK1 2151 aa8.85□□□□□ -0.99
VPS39-201ENST00000318006 C9orf47Q6ZRZ4 202 aa8.85□□□□□ -0.99
VPS39-201ENST00000318006 CSPG4Q6UVK1 2322 aa8.85□□□□□ -0.99
VPS39-201ENST00000318006 ARHGAP21Q5T5U3 1957 aa8.85□□□□□ -0.99
VPS39-201ENST00000318006 IGLV2-23P01705 113 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 LECT2O14960 151 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 U3KQE9 123 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 C10orf142B7Z368 130 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 IGHV4-38-2P0DP08 117 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 PLA2G5P39877 138 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 CRIP3Q6Q6R5 217 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 TMEM61Q8N0U2 210 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 BRK1Q8WUW1 75 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 MLST8Q9BVC4 326 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 IGHV1-58A0A0C4DH39 117 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 XCL1P47992 114 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 COX7B2Q8TF08 81 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 SPATA25Q9BR10 227 aa8.84□□□□□ -0.99
VPS39-201ENST00000318006 TEX49A0A1B0GTD5 131 aa8.83□□□□□ -1
VPS39-201ENST00000318006 DAZAP2Q15038 168 aaPredicted RBP8.83□□□□□ -1
VPS39-201ENST00000318006 Q8N9W7 124 aa8.83□□□□□ -1
VPS39-201ENST00000318006 C10orf105Q8TEF2 133 aa8.83□□□□□ -1
VPS39-201ENST00000318006 NCKAP5O14513 1909 aa8.83□□□□□ -1
VPS39-201ENST00000318006 CEP192Q8TEP8 1941 aa8.83□□□□□ -1
VPS39-201ENST00000318006 ANGP03950 147 aaKnown RBP8.83□□□□□ -1
VPS39-201ENST00000318006 C5orf38Q86SI9 138 aa8.83□□□□□ -1
VPS39-201ENST00000318006 C3orf22Q8N5N4 141 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms