RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 RS1O15537 224 aa13.71□□□□□ -0.21
NOTCH3-201ENST00000263388 CR1LQ2VPA4 569 aa13.71□□□□□ -0.21
NOTCH3-201ENST00000263388 U3KQE9 123 aa13.71□□□□□ -0.21
NOTCH3-201ENST00000263388 WIPF3A6NGB9 483 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 GNRH2O43555 120 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 HIGD2BQ4VC39 106 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 TEN1Q86WV5 123 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 IGKV2D-24A0A075B6R9 120 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 PCP2Q8IVA1 136 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 MRPL36Q9P0J6 103 aaKnown RBP13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 LY6G6EA0A0G2JKS1 128 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 DEFB125Q8N687 156 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 U3KQA8 63 aa13.7□□□□□ -0.22
NOTCH3-201ENST00000263388 COX7B2Q8TF08 81 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 BRK1Q8WUW1 75 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 ZNF503Q96F45 646 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 ASPHD1Q5U4P2 390 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 LINC01620Q4KN68 170 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 CCL25O15444 150 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 JMJD7-PLA2G4BH0Y9G9 81 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 C16orf74Q96GX8 76 aa13.69□□□□□ -0.22
NOTCH3-201ENST00000263388 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.68□□□□□ -0.22
NOTCH3-201ENST00000263388 IGKV2-29A2NJV5 120 aaPredicted RBP13.68□□□□□ -0.22
NOTCH3-201ENST00000263388 COL5A1P20908 1838 aaPredicted RBP13.68□□□□□ -0.22
NOTCH3-201ENST00000263388 TAX1BP3O14907 124 aa13.68□□□□□ -0.22
NOTCH3-201ENST00000263388 C17orf77Q96MU5 243 aa13.68□□□□□ -0.22
NOTCH3-201ENST00000263388 PRB1P04280 392 aa13.68□□□□□ -0.22
NOTCH3-201ENST00000263388 DIAPH2-AS1Q14236 149 aa13.68□□□□□ -0.22
NOTCH3-201ENST00000263388 COA6Q5JTJ3 125 aaKnown RBP13.67□□□□□ -0.22
NOTCH3-201ENST00000263388 NPBQ8NG41 125 aa13.67□□□□□ -0.22
NOTCH3-201ENST00000263388 TIRAPP58753 221 aa13.67□□□□□ -0.22
NOTCH3-201ENST00000263388 C4orf48Q5BLP8 95 aa13.67□□□□□ -0.22
NOTCH3-201ENST00000263388 TMEM256-PLSCR3K7ERE1 68 aa13.66□□□□□ -0.22
NOTCH3-201ENST00000263388 IGHV4-28A0A0C4DH34 117 aa13.66□□□□□ -0.22
NOTCH3-201ENST00000263388 A0A096LPF7 62 aa13.66□□□□□ -0.22
NOTCH3-201ENST00000263388 PDE6GP18545 87 aa13.65□□□□□ -0.22
NOTCH3-201ENST00000263388 K7EQD1 137 aa13.65□□□□□ -0.22
NOTCH3-201ENST00000263388 AGPAT4-IT1Q9H0P7 198 aa13.65□□□□□ -0.22
NOTCH3-201ENST00000263388 RPL39LQ96EH5 51 aaKnown RBP13.65□□□□□ -0.22
NOTCH3-201ENST00000263388 SND1-IT1Q9HBX3 110 aa13.65□□□□□ -0.22
NOTCH3-201ENST00000263388 WISP1O95388 367 aa13.65□□□□□ -0.23
NOTCH3-201ENST00000263388 COL4A4P53420 1690 aaPredicted RBP13.64□□□□□ -0.23
NOTCH3-201ENST00000263388 COX7A2LO14548 114 aa13.64□□□□□ -0.23
NOTCH3-201ENST00000263388 IGLL5B9A064 214 aa13.64□□□□□ -0.23
NOTCH3-201ENST00000263388 FAM215AQ9Y5M1 114 aa13.64□□□□□ -0.23
NOTCH3-201ENST00000263388 TRBV7-3A0A075B6L6 115 aa13.63□□□□□ -0.23
NOTCH3-201ENST00000263388 TRAV4A0A0B4J268 109 aa13.63□□□□□ -0.23
NOTCH3-201ENST00000263388 K7ERS5 55 aa13.63□□□□□ -0.23
NOTCH3-201ENST00000263388 C9orf47Q6ZRZ4 202 aa13.63□□□□□ -0.23
NOTCH3-201ENST00000263388 ZNF524Q96C55 264 aa13.63□□□□□ -0.23
NOTCH3-201ENST00000263388 IGHV4-4A0A075B6R2 117 aa13.63□□□□□ -0.23
NOTCH3-201ENST00000263388 MRPL55Q7Z7F7 128 aaKnown RBP13.63□□□□□ -0.23
NOTCH3-201ENST00000263388 IGKV3D-7A0A0C4DH55 119 aa13.62□□□□□ -0.23
NOTCH3-201ENST00000263388 GP9P14770 177 aa13.62□□□□□ -0.23
NOTCH3-201ENST00000263388 PLA2G2CQ5R387 149 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 C9orf66Q5T8R8 295 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 IGKV1OR2-108A0A075B7D4 117 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 PRB2P02812 416 aaPredicted RBP13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 HIGD1BQ9P298 99 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 HIST2H2BCQ6DN03 193 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 TMEM61Q8N0U2 210 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 LGALS9O00182 355 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 GYPEP15421 78 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 ATP6V0E2Q8NHE4 81 aa13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 MRPL23Q16540 153 aaKnown RBP13.61□□□□□ -0.23
NOTCH3-201ENST00000263388 Q6ZQT7 251 aa13.6□□□□□ -0.23
NOTCH3-201ENST00000263388 CAMK2N2Q96S95 79 aa13.6□□□□□ -0.23
NOTCH3-201ENST00000263388 C11orf53Q8IXP5 236 aa13.6□□□□□ -0.23
NOTCH3-201ENST00000263388 TLN2Q9Y4G6 2542 aa13.6□□□□□ -0.23
NOTCH3-201ENST00000263388 IGLV11-55A0A075B6I3 123 aa13.6□□□□□ -0.23
NOTCH3-201ENST00000263388 I3L2K1 104 aa13.59□□□□□ -0.23
NOTCH3-201ENST00000263388 ARTNQ5T4W7 220 aa13.59□□□□□ -0.23
NOTCH3-201ENST00000263388 CXCL5P42830 114 aa13.59□□□□□ -0.23
NOTCH3-201ENST00000263388 CENPVL3A0A0U1RRI6 287 aa13.59□□□□□ -0.23
NOTCH3-201ENST00000263388 K7EIM0 57 aa13.59□□□□□ -0.23
NOTCH3-201ENST00000263388 C5orf38Q86SI9 138 aa13.59□□□□□ -0.23
NOTCH3-201ENST00000263388 CRYGBP07316 175 aa13.59□□□□□ -0.23
NOTCH3-201ENST00000263388 IGHV4-59P01825 116 aa13.58□□□□□ -0.23
NOTCH3-201ENST00000263388 KRTAP27-1Q3LI81 207 aa13.58□□□□□ -0.23
NOTCH3-201ENST00000263388 TOMM6Q96B49 74 aa13.58□□□□□ -0.24
NOTCH3-201ENST00000263388 KLF2Q9Y5W3 355 aaPredicted RBP13.58□□□□□ -0.24
NOTCH3-201ENST00000263388 TRBV12-3P01733 135 aa13.58□□□□□ -0.24
NOTCH3-201ENST00000263388 Q9HAA7 133 aa13.58□□□□□ -0.24
NOTCH3-201ENST00000263388 A4D1N5 150 aa13.58□□□□□ -0.24
NOTCH3-201ENST00000263388 A0A0J9YY99 117 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 PRR15LQ9BU68 103 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 C16orf54Q6UWD8 224 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 IGHV7-81A0A0B4J1V7 117 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 DEFB136Q30KP8 78 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 SPART-AS1P0CW21 52 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 UBE2AP49459 152 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 SPTSSBQ8NFR3 76 aa13.57□□□□□ -0.24
NOTCH3-201ENST00000263388 TIMM17AQ99595 171 aa13.56□□□□□ -0.24
NOTCH3-201ENST00000263388 CTRLP40313 264 aa13.56□□□□□ -0.24
NOTCH3-201ENST00000263388 DEFB112Q30KQ8 113 aa13.56□□□□□ -0.24
NOTCH3-201ENST00000263388 Q71RC1 249 aaPredicted RBP13.56□□□□□ -0.24
NOTCH3-201ENST00000263388 SEM1Q6ZVN7 128 aa13.56□□□□□ -0.24
NOTCH3-201ENST00000263388 CTSZQ9UBR2 303 aa13.56□□□□□ -0.24
NOTCH3-201ENST00000263388 FN1P02751 2386 aaKnown RBP13.55□□□□□ -0.24
NOTCH3-201ENST00000263388 FOXI1Q12951 378 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms