RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 COX7B2Q8TF08 81 aa14.81□□□□□ -0.04
UPF1-201ENST00000262803 FAM167A-AS1Q96KT0 104 aa14.81□□□□□ -0.04
UPF1-201ENST00000262803 COL4A3Q01955 1670 aa14.81□□□□□ -0.04
UPF1-201ENST00000262803 DEFB136Q30KP8 78 aa14.81□□□□□ -0.04
UPF1-201ENST00000262803 F8W735 103 aaPredicted RBP14.81□□□□□ -0.04
UPF1-201ENST00000262803 APRG1Q8IVJ8 170 aa14.81□□□□□ -0.04
UPF1-201ENST00000262803 KMT2EQ8IZD2 1858 aa14.81□□□□□ -0.04
UPF1-201ENST00000262803 C12orf74Q32Q52 190 aa14.8□□□□□ -0.04
UPF1-201ENST00000262803 IGLV2-14P01704 120 aa14.8□□□□□ -0.04
UPF1-201ENST00000262803 TRACP01848 142 aa14.8□□□□□ -0.04
UPF1-201ENST00000262803 TRAV12-1A0A0B4J245 112 aa14.8□□□□□ -0.04
UPF1-201ENST00000262803 NCOA6Q14686 2063 aaPredicted RBP14.8□□□□□ -0.04
UPF1-201ENST00000262803 IGHV4OR15-8A0A075B7B6 117 aa14.8□□□□□ -0.04
UPF1-201ENST00000262803 A0A087WW49 117 aa14.8□□□□□ -0.04
UPF1-201ENST00000262803 NDUFS5O43920 106 aa14.8□□□□□ -0.04
UPF1-201ENST00000262803 TRBV7-3A0A075B6L6 115 aa14.79□□□□□ -0.04
UPF1-201ENST00000262803 OPRPNQ99935 248 aaPredicted RBP14.79□□□□□ -0.04
UPF1-201ENST00000262803 ZFP2Q6ZN57 461 aa14.79□□□□□ -0.04
UPF1-201ENST00000262803 ANKHD1Q8IWZ3 2542 aaKnown RBP14.79□□□□□ -0.04
UPF1-201ENST00000262803 TMEM258P61165 79 aa14.79□□□□□ -0.04
UPF1-201ENST00000262803 LINC00173Q6ZV60 143 aa14.78□□□□□ -0.04
UPF1-201ENST00000262803 CHD3Q12873 2000 aaKnown RBP14.78□□□□□ -0.04
UPF1-201ENST00000262803 BAALC-AS2P0C853 105 aa14.78□□□□□ -0.04
UPF1-201ENST00000262803 MSRB1Q9NZV6 116 aa14.78□□□□□ -0.04
UPF1-201ENST00000262803 C4orf48Q5BLP8 95 aa14.78□□□□□ -0.04
UPF1-201ENST00000262803 HHLA3Q9XRX5 114 aa14.78□□□□□ -0.04
UPF1-201ENST00000262803 TDRG1Q3Y452 100 aa14.77□□□□□ -0.04
UPF1-201ENST00000262803 TIMM17AQ99595 171 aa14.77□□□□□ -0.04
UPF1-201ENST00000262803 KIF26AQ9ULI4 1882 aaPredicted RBP14.77□□□□□ -0.04
UPF1-201ENST00000262803 SIRPDQ9H106 197 aa14.77□□□□□ -0.05
UPF1-201ENST00000262803 TRBV10-1A0A0K0K1A3 114 aa14.77□□□□□ -0.05
UPF1-201ENST00000262803 BLCAPP62952 87 aa14.77□□□□□ -0.05
UPF1-201ENST00000262803 NDUFA11Q86Y39 141 aa14.77□□□□□ -0.05
UPF1-201ENST00000262803 C5orf38Q86SI9 138 aa14.76□□□□□ -0.05
UPF1-201ENST00000262803 DEFB125Q8N687 156 aa14.76□□□□□ -0.05
UPF1-201ENST00000262803 IGLV1-47P01700 117 aa14.76□□□□□ -0.05
UPF1-201ENST00000262803 SEM1Q6ZVN7 128 aa14.76□□□□□ -0.05
UPF1-201ENST00000262803 SPRY4Q9C004 299 aa14.76□□□□□ -0.05
UPF1-201ENST00000262803 SND1-IT1Q9HBX3 110 aa14.76□□□□□ -0.05
UPF1-201ENST00000262803 UBE2AP49459 152 aa14.76□□□□□ -0.05
UPF1-201ENST00000262803 A6NDX4 124 aa14.75□□□□□ -0.05
UPF1-201ENST00000262803 TNFRSF13BO14836 293 aaPredicted RBP14.75□□□□□ -0.05
UPF1-201ENST00000262803 A0A1W2PNU3 283 aaPredicted RBP14.75□□□□□ -0.05
UPF1-201ENST00000262803 FSTL3O95633 263 aa14.75□□□□□ -0.05
UPF1-201ENST00000262803 TMEM263Q8WUH6 116 aaKnown RBP14.75□□□□□ -0.05
UPF1-201ENST00000262803 NOTCH2Q04721 2471 aa14.75□□□□□ -0.05
UPF1-201ENST00000262803 HIST2H2BCQ6DN03 193 aa14.75□□□□□ -0.05
UPF1-201ENST00000262803 GTSF1Q8WW33 167 aa14.75□□□□□ -0.05
UPF1-201ENST00000262803 RPL39LQ96EH5 51 aaKnown RBP14.75□□□□□ -0.05
UPF1-201ENST00000262803 CCL25O15444 150 aa14.74□□□□□ -0.05
UPF1-201ENST00000262803 IGLV2-23P01705 113 aa14.74□□□□□ -0.05
UPF1-201ENST00000262803 ODF3L1Q8IXM7 274 aa14.74□□□□□ -0.05
UPF1-201ENST00000262803 ODF3Q96PU9 254 aa14.74□□□□□ -0.05
UPF1-201ENST00000262803 C11orf1Q9H5F2 150 aa14.74□□□□□ -0.05
UPF1-201ENST00000262803 ANKRD39Q53RE8 183 aa14.74□□□□□ -0.05
UPF1-201ENST00000262803 IGHV3-30P01768 117 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 IGHV3-33P01772 117 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 IGHV3-30-3P0DP02 117 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 IGHV3-30-5P0DP03 117 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 GAGE12HA6NDE8 117 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 E7EUB6 86 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 TEX22C9J3V5 150 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 JMJD7-PLA2G4BH0Y9G9 81 aa14.73□□□□□ -0.05
UPF1-201ENST00000262803 TINCRA0A1B0GVN0 87 aa14.72□□□□□ -0.05
UPF1-201ENST00000262803 SMIM9A6NGZ8 99 aa14.72□□□□□ -0.05
UPF1-201ENST00000262803 MP68P56378 58 aa14.72□□□□□ -0.05
UPF1-201ENST00000262803 MSMPQ1L6U9 139 aa14.72□□□□□ -0.05
UPF1-201ENST00000262803 PRO0255Q9UI72 69 aa14.72□□□□□ -0.05
UPF1-201ENST00000262803 PDE6GP18545 87 aa14.71□□□□□ -0.05
UPF1-201ENST00000262803 DEFB105AQ8NG35 78 aa14.71□□□□□ -0.05
UPF1-201ENST00000262803 CTRLP40313 264 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 NCKAP5O14513 1909 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 Q8N7P7 452 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 VSIG2Q96IQ7 327 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 PRAC2D3DTV9 90 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 Q8N1Y9 231 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 C15orf53Q8NAA6 179 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 NTN5Q8WTR8 489 aaPredicted RBP14.7□□□□□ -0.06
UPF1-201ENST00000262803 TOMM6Q96B49 74 aa14.7□□□□□ -0.06
UPF1-201ENST00000262803 WISP2O76076 250 aa14.69□□□□□ -0.06
UPF1-201ENST00000262803 PRORYQ9H606 182 aa14.69□□□□□ -0.06
UPF1-201ENST00000262803 IGLL5B9A064 214 aa14.69□□□□□ -0.06
UPF1-201ENST00000262803 FRMD6-AS1P0C7T7 363 aa14.69□□□□□ -0.06
UPF1-201ENST00000262803 SMIM20Q8N5G0 67 aa14.69□□□□□ -0.06
UPF1-201ENST00000262803 ARHGAP21Q5T5U3 1957 aa14.69□□□□□ -0.06
UPF1-201ENST00000262803 HIGD1BQ9P298 99 aa14.68□□□□□ -0.06
UPF1-201ENST00000262803 C11orf86A6NJI1 115 aa14.68□□□□□ -0.06
UPF1-201ENST00000262803 TNCP24821 2201 aa14.68□□□□□ -0.06
UPF1-201ENST00000262803 CSPG4Q6UVK1 2322 aa14.68□□□□□ -0.06
UPF1-201ENST00000262803 SPAG11BQ08648 103 aa14.68□□□□□ -0.06
UPF1-201ENST00000262803 LGALS9O00182 355 aa14.68□□□□□ -0.06
UPF1-201ENST00000262803 DIRC1Q969H9 104 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 FANCD2OSQ96PS1 177 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 TECTAO75443 2155 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 CHKB-CPT1BH3BT56 60 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 PRB1P04280 392 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 B9D2Q9BPU9 175 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 WNK1Q9H4A3 2382 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 A0A0J9YX75 114 aa14.67□□□□□ -0.06
UPF1-201ENST00000262803 CRYBA4P53673 196 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms