RNA–Protein interactions for RNA: ENST00000219281.7

USB1-201, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USB1, Length 2,282 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-201ENST00000219281 FAM208BQ5VWN6 2430 aa12.92□□□□□ -0.34
USB1-201ENST00000219281 IGHV4OR15-8A0A075B7B6 117 aa12.92□□□□□ -0.34
USB1-201ENST00000219281 A0A087WW49 117 aa12.92□□□□□ -0.34
USB1-201ENST00000219281 C11orf86A6NJI1 115 aa12.92□□□□□ -0.34
USB1-201ENST00000219281 F5H697 171 aa12.92□□□□□ -0.34
USB1-201ENST00000219281 GAGE13Q4V321 117 aa12.92□□□□□ -0.34
USB1-201ENST00000219281 ZFP2Q6ZN57 461 aa12.92□□□□□ -0.34
USB1-201ENST00000219281 MUC4Q99102 2169 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 IGLV4-69A0A075B6H9 119 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 TRAV12-3A0A0B4J271 114 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 IGLV1-40P01703 118 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 COX6B1P14854 86 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 RPL39P62891 51 aaKnown RBP12.91□□□□□ -0.34
USB1-201ENST00000219281 ETDBQ3ZM63 59 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 CD7P09564 240 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 POLR2KP53803 58 aaKnown RBP12.91□□□□□ -0.34
USB1-201ENST00000219281 SRSF9Q13242 221 aaKnown RBP eCLIP12.91□□□□□ -0.34
USB1-201ENST00000219281 PGPEP1Q9NXJ5 209 aa12.91□□□□□ -0.34
USB1-201ENST00000219281 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.9□□□□□ -0.343e-7■□□□□ 10
USB1-201ENST00000219281 IGIPA6NJ69 53 aa12.9□□□□□ -0.34
USB1-201ENST00000219281 AVPP01185 164 aa12.9□□□□□ -0.34
USB1-201ENST00000219281 ID1P41134 155 aa12.9□□□□□ -0.34
USB1-201ENST00000219281 LRRK2Q5S007 2527 aa12.9□□□□□ -0.35
USB1-201ENST00000219281 MSMBP08118 114 aa12.9□□□□□ -0.35
USB1-201ENST00000219281 RPL32P62910 135 aaKnown RBP12.9□□□□□ -0.35
USB1-201ENST00000219281 DCANP1Q8TF63 244 aa12.9□□□□□ -0.35
USB1-201ENST00000219281 PRO0461Q9UI25 63 aa12.9□□□□□ -0.35
USB1-201ENST00000219281 VCYO14598 125 aa12.89□□□□□ -0.35
USB1-201ENST00000219281 MRPL16Q9NX20 251 aaKnown RBP12.89□□□□□ -0.35
USB1-201ENST00000219281 TSSC4Q9Y5U2 329 aaPredicted RBP12.89□□□□□ -0.35
USB1-201ENST00000219281 PMVKQ15126 192 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 TMEM95Q3KNT9 176 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 ZNF843Q8N446 348 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 KIR2DL4Q99706 377 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 USP9YO00507 2555 aaPredicted RBP12.88□□□□□ -0.35
USB1-201ENST00000219281 TMEM238LA0A1B0GVL6 79 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 SDHAF1A6NFY7 115 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 LINC01549A6NIU2 74 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 A6NJY4 79 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 FAM74A4Q5TZK3 123 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 CSPG4Q6UVK1 2322 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 POLQO75417 2590 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 CENPEQ02224 2701 aa12.88□□□□□ -0.35
USB1-201ENST00000219281 K7EMT4 169 aa12.87□□□□□ -0.35
USB1-201ENST00000219281 CFHR3Q02985 330 aa12.87□□□□□ -0.35
USB1-201ENST00000219281 SPAG8Q99932 426 aaPredicted RBP12.87□□□□□ -0.35
USB1-201ENST00000219281 EPG5Q9HCE0 2579 aa12.87□□□□□ -0.35
USB1-201ENST00000219281 IGKV3-20P01619 116 aa12.87□□□□□ -0.35
USB1-201ENST00000219281 HERVK_113P61574 105 aa12.87□□□□□ -0.35
USB1-201ENST00000219281 PAPPA-AS1Q5QFB9 102 aa12.87□□□□□ -0.35
USB1-201ENST00000219281 GTSF1LQ9H1H1 148 aa12.87□□□□□ -0.35
USB1-201ENST00000219281 UBR5O95071 2799 aaPredicted RBP12.87□□□□□ -0.35
USB1-201ENST00000219281 J3QR89 54 aa12.86□□□□□ -0.35
USB1-201ENST00000219281 SAMD13Q5VXD3 122 aa12.86□□□□□ -0.35
USB1-201ENST00000219281 TMEM141Q96I45 108 aa12.86□□□□□ -0.35
USB1-201ENST00000219281 TRAV12-2A0A075B6T6 113 aa12.86□□□□□ -0.35
USB1-201ENST00000219281 ZNF688P0C7X2 276 aa12.86□□□□□ -0.35
USB1-201ENST00000219281 UBE2D1P51668 147 aa12.86□□□□□ -0.35
USB1-201ENST00000219281 SFTA2Q6UW10 78 aa12.86□□□□□ -0.35
USB1-201ENST00000219281 GAGE12HA6NDE8 117 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 AZU1P20160 251 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 TMEM170BQ5T4T1 132 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 SIGMAR1Q99720 223 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 MDFICQ9P1T7 246 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 ZNF256Q9Y2P7 627 aaPredicted RBP12.85□□□□□ -0.35
USB1-201ENST00000219281 A0A0J9YY99 117 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 B4DSR2 109 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 LGALS9O00182 355 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 APOMO95445 188 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 TIMM17AQ99595 171 aa12.85□□□□□ -0.35
USB1-201ENST00000219281 IGHV3-16A0A0C4DH30 117 aa12.84□□□□□ -0.35
USB1-201ENST00000219281 TSPAN13O95857 204 aa12.84□□□□□ -0.35
USB1-201ENST00000219281 INSL3P51460 131 aa12.84□□□□□ -0.35
USB1-201ENST00000219281 TSPEAR-AS2P59090 65 aa12.84□□□□□ -0.35
USB1-201ENST00000219281 ZNRF2Q8NHG8 242 aa12.84□□□□□ -0.35
USB1-201ENST00000219281 ZANQ9Y493 2812 aa12.83□□□□□ -0.35
USB1-201ENST00000219281 TRBV27A0A0K0K1C4 114 aa12.83□□□□□ -0.35
USB1-201ENST00000219281 C10orf99Q6UWK7 81 aa12.83□□□□□ -0.35
USB1-201ENST00000219281 C9orf85Q96MD7 179 aa12.83□□□□□ -0.35
USB1-201ENST00000219281 A0A096LNT2 108 aa12.83□□□□□ -0.36
USB1-201ENST00000219281 LOC107984156A0A0G2JMH3 177 aa12.83□□□□□ -0.36
USB1-201ENST00000219281 ZNF56Q15929 161 aa12.83□□□□□ -0.36
USB1-201ENST00000219281 ARL17AQ8IVW1 177 aa12.83□□□□□ -0.36
USB1-201ENST00000219281 PTPN13Q12923 2485 aa12.83□□□□□ -0.36
USB1-201ENST00000219281 PSMB2P49721 201 aa12.82□□□□□ -0.36
USB1-201ENST00000219281 DLX4Q92988 240 aaPredicted RBP12.82□□□□□ -0.36
USB1-201ENST00000219281 TRBV6-5A0A0K0K1A5 114 aa12.82□□□□□ -0.36
USB1-201ENST00000219281 DSCR9P59020 149 aa12.82□□□□□ -0.36
USB1-201ENST00000219281 SMAGPQ0VAQ4 97 aa12.82□□□□□ -0.36
USB1-201ENST00000219281 ZNF876PQ49A33 203 aa12.82□□□□□ -0.36
USB1-201ENST00000219281 Q8N1Y9 231 aa12.82□□□□□ -0.36
USB1-201ENST00000219281 OPRPNQ99935 248 aaPredicted RBP12.82□□□□□ -0.36
USB1-201ENST00000219281 PSMB8P28062 276 aa12.81□□□□□ -0.36
USB1-201ENST00000219281 ANKRD17O75179 2603 aaKnown RBP12.81□□□□□ -0.36
USB1-201ENST00000219281 A0A0J9YX75 114 aa12.81□□□□□ -0.36
USB1-201ENST00000219281 M0QY20 66 aa12.81□□□□□ -0.36
USB1-201ENST00000219281 SYT8Q8NBV8 401 aa12.81□□□□□ -0.36
USB1-201ENST00000219281 SMCPP49901 116 aaPredicted RBP12.8□□□□□ -0.36
USB1-201ENST00000219281 CFAP126Q5VTH2 177 aa12.8□□□□□ -0.36
USB1-201ENST00000219281 NDUFA11Q86Y39 141 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms