RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 IGHV3OR16-10A0A075B7F0 116 aa15.2■□□□□ 0.02
SYNGAP1-227ENST00000638142 MGPP08493 103 aa15.2■□□□□ 0.02
SYNGAP1-227ENST00000638142 AZU1P20160 251 aa15.2■□□□□ 0.02
SYNGAP1-227ENST00000638142 RNASE4P34096 147 aaKnown RBP15.2■□□□□ 0.02
SYNGAP1-227ENST00000638142 BAALCQ8WXS3 180 aa15.2■□□□□ 0.02
SYNGAP1-227ENST00000638142 SPTBN1Q01082 2364 aaKnown RBP15.2■□□□□ 0.02
SYNGAP1-227ENST00000638142 H3BMG7 143 aa15.19■□□□□ 0.02
SYNGAP1-227ENST00000638142 SPRY2O43597 315 aa15.19■□□□□ 0.02
SYNGAP1-227ENST00000638142 TSSC4Q9Y5U2 329 aaPredicted RBP15.19■□□□□ 0.02
SYNGAP1-227ENST00000638142 ATRXP46100 2492 aa15.19■□□□□ 0.02
SYNGAP1-227ENST00000638142 GAGE12HA6NDE8 117 aa15.18■□□□□ 0.02
SYNGAP1-227ENST00000638142 DEFB1P60022 68 aa15.18■□□□□ 0.02
SYNGAP1-227ENST00000638142 POM121L12Q8N7R1 296 aa15.18■□□□□ 0.02
SYNGAP1-227ENST00000638142 IGF2RP11717 2491 aa15.18■□□□□ 0.02
SYNGAP1-227ENST00000638142 SVEP1Q4LDE5 3571 aa15.18■□□□□ 0.02
SYNGAP1-227ENST00000638142 RNASE3P12724 160 aaKnown RBP15.18■□□□□ 0.02
SYNGAP1-227ENST00000638142 GTSF1LQ9H1H1 148 aa15.18■□□□□ 0.02
SYNGAP1-227ENST00000638142 NXPH4O95158 308 aa15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 RPL11P62913 178 aaKnown RBP15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 GAGE13Q4V321 117 aa15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 BRD3OSQ6XYD6 125 aa15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 SPATA25Q9BR10 227 aa15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 PRO0461Q9UI25 63 aa15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 ASH1LQ9NR48 2969 aaKnown RBP15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 IGHG2P01859 326 aa15.17■□□□□ 0.02
SYNGAP1-227ENST00000638142 PRSS29PA6NIE9 313 aa15.16■□□□□ 0.02
SYNGAP1-227ENST00000638142 GNRH2O43555 120 aa15.16■□□□□ 0.02
SYNGAP1-227ENST00000638142 F6UB75 175 aa15.16■□□□□ 0.02
SYNGAP1-227ENST00000638142 IGHV4-39P01824 125 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 LGALS1P09382 135 aaKnown RBP15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 RPL32P62910 135 aaKnown RBP15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 ETDBQ3ZM63 59 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 SPAG8Q99932 426 aaPredicted RBP15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 PRADC1Q9BSG0 188 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 LINC01549A6NIU2 74 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 IGHV3-11P01762 117 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 AMTNQ6UX39 209 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 SH2D6Q7Z4S9 175 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 RHPN1-AS1Q9BWJ2 59 aa15.15■□□□□ 0.02
SYNGAP1-227ENST00000638142 COL6A6A6NMZ7 2263 aa15.14■□□□□ 0.01
SYNGAP1-227ENST00000638142 HIVEP3Q5T1R4 2406 aa15.14■□□□□ 0.01
SYNGAP1-227ENST00000638142 IGHV4OR15-8A0A075B7B6 117 aa15.14■□□□□ 0.01
SYNGAP1-227ENST00000638142 A0A087WW49 117 aa15.14■□□□□ 0.01
SYNGAP1-227ENST00000638142 KIF25-AS1Q9Y6Z4 181 aa15.14■□□□□ 0.01
SYNGAP1-227ENST00000638142 SMAGPQ0VAQ4 97 aa15.13■□□□□ 0.01
SYNGAP1-227ENST00000638142 CYSLTR1Q9Y271 337 aa15.13■□□□□ 0.01
SYNGAP1-227ENST00000638142 PF4V1P10720 104 aa15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 SCGB2A2Q13296 93 aa15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 DAZ1Q9NQZ3 744 aaKnown RBP15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 KLLNB2CW77 178 aa15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 LINC00315P59091 139 aa15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 LY6EQ16553 131 aa15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 MORN3Q6PF18 240 aaPredicted RBP15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 ACACBO00763 2458 aa15.12■□□□□ 0.01
SYNGAP1-227ENST00000638142 HOXA3O43365 443 aaPredicted RBP15.11■□□□□ 0.01
SYNGAP1-227ENST00000638142 IGKV3-7A0A075B6H7 116 aa15.11■□□□□ 0.01
SYNGAP1-227ENST00000638142 A6NDX4 124 aa15.11■□□□□ 0.01
SYNGAP1-227ENST00000638142 ZNF815PA8K554 130 aa15.11■□□□□ 0.01
SYNGAP1-227ENST00000638142 PAPPA-AS1Q5QFB9 102 aa15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 TMEM238LA0A1B0GVL6 79 aa15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 A6NJY4 79 aa15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 H3BUX3 64 aa15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 DUSP14O95147 198 aaKnown RBP15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 COX6B1P14854 86 aa15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 PIMREGQ9BSJ6 248 aa15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 ABCA2Q9BZC7 2435 aa15.1■□□□□ 0.01
SYNGAP1-227ENST00000638142 C19orf84I3L1E1 186 aa15.09■□□□□ 0.01
SYNGAP1-227ENST00000638142 IGHV4-38-2P0DP08 117 aa15.09■□□□□ 0.01
SYNGAP1-227ENST00000638142 FAM159AQ6UWV7 190 aa15.09■□□□□ 0.01
SYNGAP1-227ENST00000638142 IGHV4-61A0A0C4DH41 118 aa15.09■□□□□ 0.01
SYNGAP1-227ENST00000638142 IGLV1-40P01703 118 aa15.09■□□□□ 0.01
SYNGAP1-227ENST00000638142 CRYGDP07320 174 aa15.09■□□□□ 0.01
SYNGAP1-227ENST00000638142 POLR2KP53803 58 aaKnown RBP15.08■□□□□ 0.01
SYNGAP1-227ENST00000638142 SCGB1D4Q6XE38 83 aa15.08■□□□□ 0.01
SYNGAP1-227ENST00000638142 ID1P41134 155 aa15.08■□□□□ 0
SYNGAP1-227ENST00000638142 TP53TG1Q9Y2A0 90 aa15.08■□□□□ 0
SYNGAP1-227ENST00000638142 AKAP6Q13023 2319 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 IGIPA6NJ69 53 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 ZFP2Q6ZN57 461 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 PGPEP1Q9NXJ5 209 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 MUC4Q99102 2169 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 K7EMT4 169 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 NDUFS8O00217 210 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 TSHBP01222 138 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 HERVK_113P61574 105 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 TMEM141Q96I45 108 aa15.07■□□□□ 0
SYNGAP1-227ENST00000638142 IGLV4-69A0A075B6H9 119 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 VCYO14598 125 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 BLCAPP62952 87 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 SUMO4Q6EEV6 95 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 MTURNQ8N3F0 131 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 KIR2DL4Q99706 377 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 C11orf86A6NJI1 115 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 UBE2D1P51668 147 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 PMVKQ15126 192 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 ATP6V0E2Q8NHE4 81 aa15.06■□□□□ 0
SYNGAP1-227ENST00000638142 EPG5Q9HCE0 2579 aa15.05■□□□□ 0
SYNGAP1-227ENST00000638142 LY6DQ14210 128 aa15.05■□□□□ 0
SYNGAP1-227ENST00000638142 LCNL1Q6ZST4 164 aa15.05■□□□□ 0
SYNGAP1-227ENST00000638142 PLEKHB2Q96CS7 222 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms