RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 G3V4G9 280 aa14.64□□□□□ -0.07
CLN3-250ENST00000636839 RAB5BP61020 215 aa14.64□□□□□ -0.07
CLN3-250ENST00000636839 RASL11AQ6T310 242 aa14.64□□□□□ -0.07
CLN3-250ENST00000636839 MUC4Q99102 2169 aa14.64□□□□□ -0.07
CLN3-250ENST00000636839 M0R381 172 aa14.63□□□□□ -0.07
CLN3-250ENST00000636839 SCRT2Q9NQ03 307 aa14.63□□□□□ -0.07
CLN3-250ENST00000636839 APCSP02743 223 aa14.63□□□□□ -0.07
CLN3-250ENST00000636839 HLA-DQA1P01909 254 aa14.62□□□□□ -0.07
CLN3-250ENST00000636839 AZU1P20160 251 aa14.62□□□□□ -0.07
CLN3-250ENST00000636839 DMRTA1Q5VZB9 504 aa14.62□□□□□ -0.07
CLN3-250ENST00000636839 DNLZQ5SXM8 178 aa14.61□□□□□ -0.07
CLN3-250ENST00000636839 SPANXN1Q5VSR9 72 aa14.61□□□□□ -0.07
CLN3-250ENST00000636839 TMEM208Q9BTX3 173 aa14.61□□□□□ -0.07
CLN3-250ENST00000636839 PHLDA3Q9Y5J5 127 aa14.61□□□□□ -0.07
CLN3-250ENST00000636839 CSNK1G2-AS1Q8NCQ2 148 aa14.61□□□□□ -0.07
CLN3-250ENST00000636839 MT-ND6P03923 174 aa14.6□□□□□ -0.07
CLN3-250ENST00000636839 EVI2AP22794 236 aa14.6□□□□□ -0.07
CLN3-250ENST00000636839 AMN1Q8IY45 258 aa14.6□□□□□ -0.07
CLN3-250ENST00000636839 AMBPP02760 352 aa14.59□□□□□ -0.07
CLN3-250ENST00000636839 COX19Q49B96 90 aa14.59□□□□□ -0.07
CLN3-250ENST00000636839 C9orf85Q96MD7 179 aa14.59□□□□□ -0.07
CLN3-250ENST00000636839 CSTL1Q9H114 145 aa14.59□□□□□ -0.07
CLN3-250ENST00000636839 NBEAL2Q6ZNJ1 2754 aa14.59□□□□□ -0.07
CLN3-250ENST00000636839 JPT2Q9H910 190 aa14.59□□□□□ -0.07
CLN3-250ENST00000636839 GSN-AS1Q9NRJ2 163 aa14.59□□□□□ -0.07
CLN3-250ENST00000636839 IGHV4-4A0A075B6R2 117 aa14.58□□□□□ -0.08
CLN3-250ENST00000636839 NDUFA6P56556 154 aa14.58□□□□□ -0.08
CLN3-250ENST00000636839 EGFEM1PQ0D2K5 195 aa14.58□□□□□ -0.08
CLN3-250ENST00000636839 ZNF493Q6ZR52 646 aa14.58□□□□□ -0.08
CLN3-250ENST00000636839 A0A1B0GW15 77 aa14.58□□□□□ -0.08
CLN3-250ENST00000636839 MORN3Q6PF18 240 aaPredicted RBP14.58□□□□□ -0.08
CLN3-250ENST00000636839 GATD1Q8NB37 220 aa14.58□□□□□ -0.08
CLN3-250ENST00000636839 MED14OSP0DP75 135 aa14.57□□□□□ -0.08
CLN3-250ENST00000636839 C20orf144Q9BQM9 153 aa14.57□□□□□ -0.08
CLN3-250ENST00000636839 TRGV11A0A075B6L2 103 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 IGHV4-30-4P0DP06 118 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 SRIP30626 198 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 CACNG7P62955 275 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 C11orf72Q8NBR9 251 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 NOTCH1P46531 2555 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 LOC102724200A0A096LPH7 203 aaPredicted RBP14.56□□□□□ -0.08
CLN3-250ENST00000636839 GAS8-AS1O95177 125 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 SNRPEP62304 92 aaKnown RBP14.56□□□□□ -0.08
CLN3-250ENST00000636839 FAM104BQ5XKR9 115 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 LINC00518Q8N0U6 118 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 RNF185Q96GF1 192 aa14.56□□□□□ -0.08
CLN3-250ENST00000636839 S100A8P05109 93 aa14.55□□□□□ -0.08
CLN3-250ENST00000636839 C14orf178Q8N769 122 aaPredicted RBP14.55□□□□□ -0.08
CLN3-250ENST00000636839 TMEM191AQ9H0A3 160 aa14.55□□□□□ -0.08
CLN3-250ENST00000636839 SMKR1H3BMG3 65 aa14.54□□□□□ -0.08
CLN3-250ENST00000636839 LINC00467Q9BRT7 94 aa14.54□□□□□ -0.08
CLN3-250ENST00000636839 S100A12P80511 92 aa14.54□□□□□ -0.08
CLN3-250ENST00000636839 MRPL51Q4U2R6 128 aaKnown RBP14.54□□□□□ -0.08
CLN3-250ENST00000636839 SAMD5Q5TGI4 173 aa14.54□□□□□ -0.08
CLN3-250ENST00000636839 TMEM256Q8N2U0 113 aa14.54□□□□□ -0.08
CLN3-250ENST00000636839 ALKBH7Q9BT30 221 aaPredicted RBP14.54□□□□□ -0.08
CLN3-250ENST00000636839 C1QTNF4Q9BXJ3 329 aa14.54□□□□□ -0.08
CLN3-250ENST00000636839 ZMAT5Q9UDW3 170 aaKnown RBP14.54□□□□□ -0.08
CLN3-250ENST00000636839 NXPH4O95158 308 aa14.53□□□□□ -0.08
CLN3-250ENST00000636839 PRB2P02812 416 aaPredicted RBP14.53□□□□□ -0.08
CLN3-250ENST00000636839 RAB4AP20338 218 aa14.53□□□□□ -0.08
CLN3-250ENST00000636839 GOLT1BQ9Y3E0 138 aa14.53□□□□□ -0.08
CLN3-250ENST00000636839 IQCJQ1A5X6 159 aa14.53□□□□□ -0.08
CLN3-250ENST00000636839 ZNF705AQ6ZN79 300 aaPredicted RBP14.53□□□□□ -0.08
CLN3-250ENST00000636839 NCR2O95944 276 aa14.52□□□□□ -0.09
CLN3-250ENST00000636839 S100A6P06703 90 aa14.52□□□□□ -0.09
CLN3-250ENST00000636839 ZNF876PQ49A33 203 aa14.52□□□□□ -0.09
CLN3-250ENST00000636839 RCHY1Q96PM5 261 aa14.52□□□□□ -0.09
CLN3-250ENST00000636839 SAMD10Q9BYL1 202 aa14.52□□□□□ -0.09
CLN3-250ENST00000636839 DNAH3Q8TD57 4116 aa14.52□□□□□ -0.09
CLN3-250ENST00000636839 A0A087WWL8 130 aa14.51□□□□□ -0.09
CLN3-250ENST00000636839 TRAV26-2A0A0B4J265 109 aa14.51□□□□□ -0.09
CLN3-250ENST00000636839 GATA1P15976 413 aaPredicted RBP14.51□□□□□ -0.09
CLN3-250ENST00000636839 RNASE8Q8TDE3 154 aaKnown RBP14.51□□□□□ -0.09
CLN3-250ENST00000636839 MGAM2Q2M2H8 2515 aa14.51□□□□□ -0.09
CLN3-250ENST00000636839 D6R8Y8 96 aa14.51□□□□□ -0.09
CLN3-250ENST00000636839 NUPR1O60356 82 aa14.51□□□□□ -0.09
CLN3-250ENST00000636839 NBEAL1Q6ZS30 2694 aa14.5□□□□□ -0.09
CLN3-250ENST00000636839 C5orf52A6NGY3 159 aa14.5□□□□□ -0.09
CLN3-250ENST00000636839 ZNF415Q09FC8 603 aa14.5□□□□□ -0.09
CLN3-250ENST00000636839 DEFB135Q30KP9 77 aa14.5□□□□□ -0.09
CLN3-250ENST00000636839 PDZD11Q5EBL8 140 aa14.49□□□□□ -0.09
CLN3-250ENST00000636839 MRPL16Q9NX20 251 aaKnown RBP14.49□□□□□ -0.09
CLN3-250ENST00000636839 KIF25-AS1Q9Y6Z4 181 aa14.49□□□□□ -0.09
CLN3-250ENST00000636839 C18orf32Q8TCD1 76 aa14.49□□□□□ -0.09
CLN3-250ENST00000636839 PLAC8L1A1L4L8 177 aa14.48□□□□□ -0.09
CLN3-250ENST00000636839 LINC00310P59036 64 aa14.48□□□□□ -0.09
CLN3-250ENST00000636839 LINC00315P59091 139 aa14.48□□□□□ -0.09
CLN3-250ENST00000636839 SMIM15Q7Z3B0 74 aa14.48□□□□□ -0.09
CLN3-250ENST00000636839 KIR2DL5BA0A0G2JN68 375 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 KIR2DL5BA0A0G2JPC4 375 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 M0R2P5 195 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 MGPP08493 103 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 CKS2P33552 79 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 FAM74A4Q5TZK3 123 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 KIR2DL5AQ8N109 375 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 KIR2DL5BQ8NHK3 375 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 TMEM263Q8WUH6 116 aaKnown RBP14.47□□□□□ -0.09
CLN3-250ENST00000636839 AP1S3Q96PC3 154 aa14.47□□□□□ -0.09
CLN3-250ENST00000636839 U3KQK5 164 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms