RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TMEM241Q24JQ0 296 aa13.49□□□□□ -0.25
SQSTM1-216ENST00000626660 SYT8Q8NBV8 401 aa13.49□□□□□ -0.25
SQSTM1-216ENST00000626660 NUDT10Q8NFP7 164 aa13.49□□□□□ -0.25
SQSTM1-216ENST00000626660 NUDT11Q96G61 164 aa13.49□□□□□ -0.25
SQSTM1-216ENST00000626660 NDUFAF3Q9BU61 184 aa13.49□□□□□ -0.25
SQSTM1-216ENST00000626660 PHLDA3Q9Y5J5 127 aa13.49□□□□□ -0.25
SQSTM1-216ENST00000626660 TENM2Q9NT68 2774 aa13.48□□□□□ -0.25
SQSTM1-216ENST00000626660 MED14OSP0DP75 135 aa13.48□□□□□ -0.25
SQSTM1-216ENST00000626660 TCTAP57738 103 aa13.48□□□□□ -0.25
SQSTM1-216ENST00000626660 LINC01551Q86U37 167 aa13.48□□□□□ -0.25
SQSTM1-216ENST00000626660 IGHV4-4A0A075B6R2 117 aa13.47□□□□□ -0.25
SQSTM1-216ENST00000626660 IGHV3-53P01767 116 aa13.47□□□□□ -0.25
SQSTM1-216ENST00000626660 OR4C5Q8NGB2 326 aa13.47□□□□□ -0.25
SQSTM1-216ENST00000626660 RNASE7Q9H1E1 156 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-216ENST00000626660 NAT8Q9UHE5 227 aa13.47□□□□□ -0.25
SQSTM1-216ENST00000626660 TRAV4A0A0B4J268 109 aa13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 PIK3CD-AS1Q5SR53 167 aa13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 TMEM88Q6PEY1 159 aa13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 FAM231DQ6ZW35 169 aa13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 ZNF575Q86XF7 245 aa13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 RPP21Q9H633 154 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 SCRT2Q9NQ03 307 aa13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 CSMD3Q7Z407 3707 aa13.46□□□□□ -0.25
SQSTM1-216ENST00000626660 GATCO43716 136 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-216ENST00000626660 SFTA3P0C7M3 94 aa13.45□□□□□ -0.26
SQSTM1-216ENST00000626660 ERVFC1-1P60608 527 aa13.45□□□□□ -0.26
SQSTM1-216ENST00000626660 ZFP82Q8N141 532 aa13.45□□□□□ -0.26
SQSTM1-216ENST00000626660 TRGV4A0A0C4DH28 118 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 OR5AL1P0C617 328 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 GZMBP10144 247 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 HOXA5P20719 270 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 SLAQ13239 276 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 ADIRFQ15847 76 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 UQCC3Q6UW78 93 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 FER1L6-AS1Q8NA97 138 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 ZNF479Q96JC4 524 aa13.44□□□□□ -0.26
SQSTM1-216ENST00000626660 STARD9Q9P2P6 4700 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 NACAE9PAV3 2078 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 A8MWV9 139 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 M0R381 172 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 RS1O15537 224 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 SNAI2O43623 268 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 CIDEAO60543 219 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 RPL23P62829 140 aaKnown RBP13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 C15orf54Q8N8G6 183 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 C15orf53Q8NAA6 179 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 TPPP3Q9BW30 176 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 APLNQ9ULZ1 77 aa13.43□□□□□ -0.26
SQSTM1-216ENST00000626660 TRAV26-1A0A087WT03 109 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 A0A1W2PPQ1 181 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 SPANXN1Q5VSR9 72 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 CFAP126Q5VTH2 177 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 DMRTA1Q5VZB9 504 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 COMMD7Q86VX2 200 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 POM121L12Q8N7R1 296 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 SSBP4Q9BWG4 385 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 OSTCQ9NRP0 149 aa13.42□□□□□ -0.26
SQSTM1-216ENST00000626660 IGLC6P0CF74 106 aa13.41□□□□□ -0.26
SQSTM1-216ENST00000626660 FHL2Q14192 279 aa13.41□□□□□ -0.26
SQSTM1-216ENST00000626660 CT83Q5H943 113 aa13.41□□□□□ -0.26
SQSTM1-216ENST00000626660 OR10AG1Q8NH19 301 aa13.41□□□□□ -0.26
SQSTM1-216ENST00000626660 ISOC2Q96AB3 205 aa13.41□□□□□ -0.26
SQSTM1-216ENST00000626660 PRO0255Q9UI72 69 aa13.41□□□□□ -0.26
SQSTM1-216ENST00000626660 A0A0J9YY99 117 aa13.4□□□□□ -0.26
SQSTM1-216ENST00000626660 LINC00862A6NCI5 91 aa13.4□□□□□ -0.26
SQSTM1-216ENST00000626660 A8MWL6 223 aa13.4□□□□□ -0.26
SQSTM1-216ENST00000626660 F2Z2F3 143 aa13.4□□□□□ -0.26
SQSTM1-216ENST00000626660 HHLA3Q9XRX5 114 aa13.4□□□□□ -0.26
SQSTM1-216ENST00000626660 H3BNG1 76 aa13.39□□□□□ -0.27
SQSTM1-216ENST00000626660 PAX4O43316 350 aa13.39□□□□□ -0.27
SQSTM1-216ENST00000626660 NXPH4O95158 308 aa13.39□□□□□ -0.27
SQSTM1-216ENST00000626660 CACNG7P62955 275 aa13.39□□□□□ -0.27
SQSTM1-216ENST00000626660 SFRP2Q96HF1 295 aa13.39□□□□□ -0.27
SQSTM1-216ENST00000626660 DYNC2H1Q8NCM8 4307 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-216ENST00000626660 MUC21A0A0G2JKD1 596 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 MUC21A0A140T8X8 626 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 RHODO00212 210 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 NUDT3O95989 172 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 SSTP61278 116 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 ZFP2Q6ZN57 461 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 OR10G8Q8NGN5 311 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 JPT2Q9H910 190 aa13.38□□□□□ -0.27
SQSTM1-216ENST00000626660 IGHV3-73A0A0B4J1V6 119 aa13.37□□□□□ -0.27
SQSTM1-216ENST00000626660 CRYBA4P53673 196 aa13.37□□□□□ -0.27
SQSTM1-216ENST00000626660 LYZL1Q6UWQ5 148 aa13.37□□□□□ -0.27
SQSTM1-216ENST00000626660 GATA1P15976 413 aaPredicted RBP13.36□□□□□ -0.27
SQSTM1-216ENST00000626660 CTRLP40313 264 aa13.36□□□□□ -0.27
SQSTM1-216ENST00000626660 PNRC1Q12796 327 aaPredicted RBP13.36□□□□□ -0.27
SQSTM1-216ENST00000626660 FAM74A4Q5TZK3 123 aa13.36□□□□□ -0.27
SQSTM1-216ENST00000626660 TSKUQ8WUA8 353 aa13.36□□□□□ -0.27
SQSTM1-216ENST00000626660 VSIG2Q96IQ7 327 aa13.36□□□□□ -0.27
SQSTM1-216ENST00000626660 TMEM218A2RU14 115 aa13.35□□□□□ -0.27
SQSTM1-216ENST00000626660 WDR73Q6P4I2 378 aa13.35□□□□□ -0.27
SQSTM1-216ENST00000626660 AP1S3Q96PC3 154 aa13.35□□□□□ -0.27
SQSTM1-216ENST00000626660 V9GYV3 84 aa13.35□□□□□ -0.27
SQSTM1-216ENST00000626660 A0A087WWL8 130 aa13.34□□□□□ -0.27
SQSTM1-216ENST00000626660 F8W036 122 aa13.34□□□□□ -0.27
SQSTM1-216ENST00000626660 SMIM17P0DL12 118 aa13.34□□□□□ -0.27
SQSTM1-216ENST00000626660 SAMD10Q9BYL1 202 aa13.34□□□□□ -0.27
SQSTM1-216ENST00000626660 GFRA4Q9GZZ7 299 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms