RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 SUN5Q8TC36 379 aa16.54■□□□□ 0.24
PTPRF-216ENST00000617451 K7EQM0 130 aa16.53■□□□□ 0.24
PTPRF-216ENST00000617451 IGLV2-11P01706 119 aa16.53■□□□□ 0.24
PTPRF-216ENST00000617451 CDC34P49427 236 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-216ENST00000617451 SMUG1Q53HV7 270 aa16.52■□□□□ 0.24
PTPRF-216ENST00000617451 Q8N3U1 123 aa16.52■□□□□ 0.24
PTPRF-216ENST00000617451 GCHFRP30047 84 aa16.51■□□□□ 0.23
PTPRF-216ENST00000617451 FLI1Q01543 452 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-216ENST00000617451 Q6ZSA8 131 aa16.51■□□□□ 0.23
PTPRF-216ENST00000617451 OR2G3Q8NGZ4 309 aa16.51■□□□□ 0.23
PTPRF-216ENST00000617451 RAB24Q969Q5 203 aa16.51■□□□□ 0.23
PTPRF-216ENST00000617451 ZFP69Q49AA0 526 aa16.5■□□□□ 0.23
PTPRF-216ENST00000617451 PRNTQ86SH4 94 aa16.5■□□□□ 0.23
PTPRF-216ENST00000617451 EPDR1Q9UM22 224 aa16.5■□□□□ 0.23
PTPRF-216ENST00000617451 TRAV8-3A0A0A6YYJ7 113 aa16.49■□□□□ 0.23
PTPRF-216ENST00000617451 J3QL48 77 aa16.49■□□□□ 0.23
PTPRF-216ENST00000617451 LINC00694P0DN24 101 aa16.49■□□□□ 0.23
PTPRF-216ENST00000617451 SUMO1P63165 101 aaKnown RBP16.49■□□□□ 0.23
PTPRF-216ENST00000617451 ZFP2Q6ZN57 461 aa16.49■□□□□ 0.23
PTPRF-216ENST00000617451 SH3BGRL3Q9H299 93 aa16.49■□□□□ 0.23
PTPRF-216ENST00000617451 PARLQ9H300 379 aa16.49■□□□□ 0.23
PTPRF-216ENST00000617451 GGTLC3B5MD39 225 aa16.48■□□□□ 0.23
PTPRF-216ENST00000617451 CYB561D1Q8N8Q1 229 aa16.48■□□□□ 0.23
PTPRF-216ENST00000617451 GAGE12JA6NER3 117 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 A8MWV9 139 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 PLA2G1BP04054 148 aaKnown RBP16.47■□□□□ 0.23
PTPRF-216ENST00000617451 GAGE1Q13065 139 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 GAGE4Q13068 117 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 GAGE5Q13069 117 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 GAGE13Q4V321 117 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 PIK3CD-AS1Q5SR53 167 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 SAPCD1Q5SSQ6 148 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 DAZ4Q86SG3 579 aaKnown RBP16.47■□□□□ 0.23
PTPRF-216ENST00000617451 HSD17B11Q8NBQ5 300 aa16.47■□□□□ 0.23
PTPRF-216ENST00000617451 PSMG3Q9BT73 122 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-216ENST00000617451 DAZ3Q9NR90 486 aaKnown RBP16.47■□□□□ 0.23
PTPRF-216ENST00000617451 IGKV3D-20A0A0C4DH25 116 aa16.46■□□□□ 0.23
PTPRF-216ENST00000617451 LECT2O14960 151 aa16.46■□□□□ 0.23
PTPRF-216ENST00000617451 TMEM167BQ9NRX6 74 aa16.46■□□□□ 0.23
PTPRF-216ENST00000617451 Q9UF83 564 aa16.46■□□□□ 0.23
PTPRF-216ENST00000617451 DEFA1P59665 94 aa16.45■□□□□ 0.22
PTPRF-216ENST00000617451 DEFA3P59666 94 aa16.45■□□□□ 0.22
PTPRF-216ENST00000617451 TOR2AQ5JU69 321 aa16.45■□□□□ 0.22
PTPRF-216ENST00000617451 LINC00528Q8N1L1 170 aa16.45■□□□□ 0.22
PTPRF-216ENST00000617451 CXorf1O96002 111 aa16.44■□□□□ 0.22
PTPRF-216ENST00000617451 MBP02144 154 aa16.44■□□□□ 0.22
PTPRF-216ENST00000617451 ATP6V0CP27449 155 aa16.44■□□□□ 0.22
PTPRF-216ENST00000617451 LGALSLQ3ZCW2 172 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-216ENST00000617451 OR2T35Q8NGX2 323 aa16.44■□□□□ 0.22
PTPRF-216ENST00000617451 LINC00479Q96M42 142 aa16.44■□□□□ 0.22
PTPRF-216ENST00000617451 A0A087WWC5 75 aa16.43■□□□□ 0.22
PTPRF-216ENST00000617451 S100A4P26447 101 aaKnown RBP16.43■□□□□ 0.22
PTPRF-216ENST00000617451 SERF2P84101 59 aa16.43■□□□□ 0.22
PTPRF-216ENST00000617451 UFSP1Q6NVU6 142 aa16.43■□□□□ 0.22
PTPRF-216ENST00000617451 IGLV2-33A0A075B6J2 118 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-216ENST00000617451 C14orf178Q8N769 122 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-216ENST00000617451 SAMD10Q9BYL1 202 aa16.42■□□□□ 0.22
PTPRF-216ENST00000617451 JPT2Q9H910 190 aa16.42■□□□□ 0.22
PTPRF-216ENST00000617451 FABP5P3A8MUU1 101 aa16.41■□□□□ 0.22
PTPRF-216ENST00000617451 KRTAP29-1A8MX34 341 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-216ENST00000617451 ASIPP42127 132 aa16.41■□□□□ 0.22
PTPRF-216ENST00000617451 FGF8P55075 233 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-216ENST00000617451 BAALCQ8WXS3 180 aa16.41■□□□□ 0.22
PTPRF-216ENST00000617451 ACTR3CQ9C0K3 210 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-216ENST00000617451 IL36BQ9NZH7 164 aa16.41■□□□□ 0.22
PTPRF-216ENST00000617451 COX11Q9Y6N1 276 aa16.41■□□□□ 0.22
PTPRF-216ENST00000617451 TRAV34A0A0B4J273 112 aa16.4■□□□□ 0.22
PTPRF-216ENST00000617451 A0A1W2PRE2 83 aa16.4■□□□□ 0.22
PTPRF-216ENST00000617451 DEFB104AQ8WTQ1 72 aa16.4■□□□□ 0.22
PTPRF-216ENST00000617451 AQP10Q96PS8 301 aa16.4■□□□□ 0.22
PTPRF-216ENST00000617451 TNFSF18Q9UNG2 199 aa16.4■□□□□ 0.22
PTPRF-216ENST00000617451 ARL2-SNX15V9GYD0 113 aa16.4■□□□□ 0.22
PTPRF-216ENST00000617451 DMRTA1Q5VZB9 504 aa16.39■□□□□ 0.21
PTPRF-216ENST00000617451 LRP1Q07954 4544 aaKnown RBP16.38■□□□□ 0.21
PTPRF-216ENST00000617451 LINC01620Q4KN68 170 aa16.38■□□□□ 0.21
PTPRF-216ENST00000617451 RMI2Q96E14 147 aa16.37■□□□□ 0.21
PTPRF-216ENST00000617451 ALG5Q9Y673 324 aa16.37■□□□□ 0.21
PTPRF-216ENST00000617451 A6NHS1 94 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 B4DEV8 164 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 H3BVH4 76 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 SCXQ7RTU7 201 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 NIT1Q86X76 327 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 Q8N976 141 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 DNAJC30Q96LL9 226 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 URGCP-MRPS24S4R325 110 aa16.36■□□□□ 0.21
PTPRF-216ENST00000617451 RNF222A6NCQ9 220 aa16.35■□□□□ 0.21
PTPRF-216ENST00000617451 RBFOX3A6NFN3 312 aa16.35■□□□□ 0.21
PTPRF-216ENST00000617451 RHODO00212 210 aa16.35■□□□□ 0.21
PTPRF-216ENST00000617451 IFNA7P01567 189 aa16.35■□□□□ 0.21
PTPRF-216ENST00000617451 DNLZQ5SXM8 178 aa16.35■□□□□ 0.21
PTPRF-216ENST00000617451 KRBOX1C9JBD0 128 aa16.34■□□□□ 0.21
PTPRF-216ENST00000617451 ARMS2P0C7Q2 107 aa16.34■□□□□ 0.21
PTPRF-216ENST00000617451 SEC11BP0C7V7 166 aa16.34■□□□□ 0.21
PTPRF-216ENST00000617451 CRIP1P50238 77 aa16.34■□□□□ 0.21
PTPRF-216ENST00000617451 Q86TA4 180 aa16.34■□□□□ 0.21
PTPRF-216ENST00000617451 SYT8Q8NBV8 401 aa16.34■□□□□ 0.21
PTPRF-216ENST00000617451 IGKV2D-24A0A075B6R9 120 aa16.33■□□□□ 0.2
PTPRF-216ENST00000617451 PEX7O00628 323 aa16.33■□□□□ 0.2
PTPRF-216ENST00000617451 ZNF726P1Q15940 193 aa16.33■□□□□ 0.2
PTPRF-216ENST00000617451 KLK12Q9UKR0 248 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms