RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ZNF506Q5JVG8 444 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 DPPA3Q6W0C5 159 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 ZNF575Q86XF7 245 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 MBD3L1Q8WWY6 194 aa10.44□□□□□ -0.74
TRIM28-203ENST00000593582 DYNC1H1Q14204 4646 aaKnown RBP10.44□□□□□ -0.74
TRIM28-203ENST00000593582 LOC100131303A0A0U1RQF7 123 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 PGPEP1LA6NFU8 196 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 B4DEV8 164 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 PAGE4O60829 102 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 FAM162BQ5T6X4 162 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 COX8CQ7Z4L0 72 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 SLC25A29Q8N8R3 303 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 ZC2HC1AQ96GY0 325 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 PRADC1Q9BSG0 188 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 LY96Q9Y6Y9 160 aa10.43□□□□□ -0.74
TRIM28-203ENST00000593582 IGHV3-73A0A0B4J1V6 119 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 A0A1B0GV50 99 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 TRBV6-4A0A1B0GX49 114 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 C16orf90A8MZG2 172 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 TPT1P13693 172 aaKnown RBP10.42□□□□□ -0.74
TRIM28-203ENST00000593582 AKR1C3P42330 323 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 CRIP1P50238 77 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 RHOHQ15669 191 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 PIK3CD-AS1Q5SR53 167 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 TMUB2Q71RG4 321 aa10.42□□□□□ -0.74
TRIM28-203ENST00000593582 TRBV6-1A0A0K0K1D8 114 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 A8MWV9 139 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 KRBOX1C9JBD0 128 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 K7EP13 123 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 M0R036 132 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 SH2D1AO60880 128 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 LTAP01374 205 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 H2AFB1P0C5Y9 115 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 MGST1P10620 155 aaKnown RBP10.41□□□□□ -0.74
TRIM28-203ENST00000593582 EVI2AP22794 236 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 WFDC10BQ8IUB3 73 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 IL36BQ9NZH7 164 aa10.41□□□□□ -0.74
TRIM28-203ENST00000593582 H3BVH4 76 aa10.4□□□□□ -0.74
TRIM28-203ENST00000593582 S100A9P06702 114 aaKnown RBP10.4□□□□□ -0.74
TRIM28-203ENST00000593582 TIRAPP58753 221 aa10.4□□□□□ -0.74
TRIM28-203ENST00000593582 ZNF674Q2M3X9 581 aa10.4□□□□□ -0.74
TRIM28-203ENST00000593582 LGALSLQ3ZCW2 172 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-203ENST00000593582 NFE4Q86UQ8 179 aa10.4□□□□□ -0.74
TRIM28-203ENST00000593582 DNAH10OSP0CZ25 163 aa10.39□□□□□ -0.75
TRIM28-203ENST00000593582 DNLZQ5SXM8 178 aa10.39□□□□□ -0.75
TRIM28-203ENST00000593582 EIF5AL1Q6IS14 154 aaKnown RBP10.39□□□□□ -0.75
TRIM28-203ENST00000593582 ZFP2Q6ZN57 461 aa10.39□□□□□ -0.75
TRIM28-203ENST00000593582 SPATA12Q7Z6I5 190 aa10.39□□□□□ -0.75
TRIM28-203ENST00000593582 SYT8Q8NBV8 401 aa10.39□□□□□ -0.75
TRIM28-203ENST00000593582 PARLQ9H300 379 aa10.39□□□□□ -0.75
TRIM28-203ENST00000593582 ARMS2P0C7Q2 107 aa10.38□□□□□ -0.75
TRIM28-203ENST00000593582 LINC01559Q495D7 138 aa10.38□□□□□ -0.75
TRIM28-203ENST00000593582 Q6ZRN7 208 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-203ENST00000593582 TMSB15BA0A087X1C1 80 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 SCO2A0A1W2PP80 73 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 GRIFINA4D1Z8 144 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 CRYGDP07320 174 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 RAB5CP51148 216 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 DMRTA1Q5VZB9 504 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 TCTE3Q8IZS6 198 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 C10orf126Q8N4M7 172 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 BOLA1Q9Y3E2 137 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 PHLDA3Q9Y5J5 127 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 TNFRSF18Q9Y5U5 241 aa10.37□□□□□ -0.75
TRIM28-203ENST00000593582 TRAV8-6A0A0B4J262 113 aa10.36□□□□□ -0.75
TRIM28-203ENST00000593582 IGHV3-38A0A0C4DH36 116 aa10.36□□□□□ -0.75
TRIM28-203ENST00000593582 OR10J3Q5JRS4 329 aa10.36□□□□□ -0.75
TRIM28-203ENST00000593582 MANBALQ9NQG1 85 aa10.36□□□□□ -0.75
TRIM28-203ENST00000593582 MSRB1Q9NZV6 116 aa10.36□□□□□ -0.75
TRIM28-203ENST00000593582 TEX46H3BTG2 121 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 RHODO00212 210 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 EREGO14944 169 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 ERVFC1-1P60608 527 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 Q6ZSN1 163 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 BAGE2Q86Y30 109 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 ATP6V0E2Q8NHE4 81 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 GTSF1LQ9H1H1 148 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 JPT2Q9H910 190 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 SCRT2Q9NQ03 307 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 GNG13Q9P2W3 67 aa10.35□□□□□ -0.75
TRIM28-203ENST00000593582 LRP1BQ9NZR2 4599 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 TRAV1-1A0A0B4J248 108 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 M0R381 172 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 KRTAP10-2P60368 255 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 LINC01556Q5JQF7 62 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 LELP1Q5T871 98 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 UFSP1Q6NVU6 142 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 ZFP82Q8N141 532 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 MLST8Q9BVC4 326 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 SAMD10Q9BYL1 202 aa10.34□□□□□ -0.75
TRIM28-203ENST00000593582 GAGE12JA6NER3 117 aa10.33□□□□□ -0.76
TRIM28-203ENST00000593582 CCL20P78556 96 aa10.33□□□□□ -0.76
TRIM28-203ENST00000593582 GAGE1Q13065 139 aa10.33□□□□□ -0.76
TRIM28-203ENST00000593582 GAGE4Q13068 117 aa10.33□□□□□ -0.76
TRIM28-203ENST00000593582 GAGE5Q13069 117 aa10.33□□□□□ -0.76
TRIM28-203ENST00000593582 GAGE13Q4V321 117 aa10.33□□□□□ -0.76
TRIM28-203ENST00000593582 FAM74A4Q5TZK3 123 aa10.33□□□□□ -0.76
TRIM28-203ENST00000593582 CDK2AP2O75956 126 aa10.32□□□□□ -0.76
TRIM28-203ENST00000593582 C1QBP02746 253 aa10.32□□□□□ -0.76
TRIM28-203ENST00000593582 RPL35P42766 123 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 228.4 ms