RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 KANTRA0A1W2PQU2 76 aa10.01□□□□□ -0.81
CLN3-236ENST00000568558 PSCAO43653 123 aa10.01□□□□□ -0.81
CLN3-236ENST00000568558 LGALSLQ3ZCW2 172 aaPredicted RBP10.01□□□□□ -0.81
CLN3-236ENST00000568558 TMEM167BQ9NRX6 74 aa10.01□□□□□ -0.81
CLN3-236ENST00000568558 FLG2Q5D862 2391 aaPredicted RBP10.01□□□□□ -0.81
CLN3-236ENST00000568558 IGLV5-52A0A0A0MRZ9 124 aa10□□□□□ -0.81
CLN3-236ENST00000568558 MAP1LC3B2A6NCE7 125 aa10□□□□□ -0.81
CLN3-236ENST00000568558 FBLL1A6NHQ2 334 aaKnown RBP10□□□□□ -0.81
CLN3-236ENST00000568558 IBA57-AS1B1ANH7 110 aa10□□□□□ -0.81
CLN3-236ENST00000568558 UBE2G2P60604 165 aa10□□□□□ -0.81
CLN3-236ENST00000568558 SUMO1P63165 101 aaKnown RBP10□□□□□ -0.81
CLN3-236ENST00000568558 HAMPP81172 84 aa10□□□□□ -0.81
CLN3-236ENST00000568558 SLC25A29Q8N8R3 303 aa10□□□□□ -0.81
CLN3-236ENST00000568558 C5orf17Q8NAS9 161 aa10□□□□□ -0.81
CLN3-236ENST00000568558 NTN5Q8WTR8 489 aaPredicted RBP10□□□□□ -0.81
CLN3-236ENST00000568558 MAP1LC3BQ9GZQ8 125 aa10□□□□□ -0.81
CLN3-236ENST00000568558 TRAV8-6A0A0B4J262 113 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 A0A1B0GVG6 124 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 RS1O15537 224 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 PFDN1O60925 122 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 TCRAP04437 139 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 PFN1P07737 140 aaKnown RBP9.99□□□□□ -0.81
CLN3-236ENST00000568558 SEC11BP0C7V7 166 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 ZNF876PQ49A33 203 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 TMEM70Q9BUB7 260 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 BOLA1Q9Y3E2 137 aa9.99□□□□□ -0.81
CLN3-236ENST00000568558 TRBV6-4A0A1B0GX49 114 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 CIDEAO60543 219 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 IGLV2-11P01706 119 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 C1QBP02746 253 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 ZNF80P51504 273 aaPredicted RBP9.98□□□□□ -0.81
CLN3-236ENST00000568558 RHOHQ15669 191 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 OR10J3Q5JRS4 329 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 CFAP126Q5VTH2 177 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 DPPA3Q6W0C5 159 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 Q8N814 137 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 NDFIP1Q9BT67 221 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 Q9HAA7 133 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 C11orf21Q9P2W6 132 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 EPDR1Q9UM22 224 aa9.98□□□□□ -0.81
CLN3-236ENST00000568558 SERTM2A0A1B0GWG4 89 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 A0A1W2PRE2 83 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 FAM74A7A6NL05 159 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 FAM229AH3BQW9 127 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 FAM213BQ8TBF2 198 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 LINC00479Q96M42 142 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 C9orf85Q96MD7 179 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 PRADC1Q9BSG0 188 aa9.97□□□□□ -0.81
CLN3-236ENST00000568558 A0A1B0GV50 99 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 IGHV3-30P01768 117 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 IGHV3-33P01772 117 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 IGHV3-30-3P0DP02 117 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 IGHV3-30-5P0DP03 117 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 TPT1P13693 172 aaKnown RBP9.96□□□□□ -0.82
CLN3-236ENST00000568558 LELP1Q5T871 98 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 AKAP14Q86UN6 197 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 TMEM75Q8N9X5 138 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 STOML3Q8TAV4 291 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 PSG8Q9UQ74 426 aa9.96□□□□□ -0.82
CLN3-236ENST00000568558 IGHV3-73A0A0B4J1V6 119 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 TRAV34A0A0B4J273 112 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 UMAD1C9J7I0 102 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 GCGP01275 180 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 ZNF506Q5JVG8 444 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 Q6ZSN1 163 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 CYB561D1Q8N8Q1 229 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 SFT2D1Q8WV19 159 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 MBD3L1Q8WWY6 194 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 PTH2Q96A98 100 aa9.95□□□□□ -0.82
CLN3-236ENST00000568558 PGPEP1LA6NFU8 196 aa9.94□□□□□ -0.82
CLN3-236ENST00000568558 K7EQM0 130 aa9.94□□□□□ -0.82
CLN3-236ENST00000568558 IFNA7P01567 189 aa9.94□□□□□ -0.82
CLN3-236ENST00000568558 MGST1P10620 155 aaKnown RBP9.94□□□□□ -0.82
CLN3-236ENST00000568558 FLI1Q01543 452 aaPredicted RBP9.94□□□□□ -0.82
CLN3-236ENST00000568558 LAGE3Q14657 143 aa9.94□□□□□ -0.82
CLN3-236ENST00000568558 PRNTQ86SH4 94 aa9.94□□□□□ -0.82
CLN3-236ENST00000568558 ATP6V0E2Q8NHE4 81 aa9.94□□□□□ -0.82
CLN3-236ENST00000568558 GTSF1LQ9H1H1 148 aa9.94□□□□□ -0.82
CLN3-236ENST00000568558 PEX7O00628 323 aa9.93□□□□□ -0.82
CLN3-236ENST00000568558 RNASE3P12724 160 aaKnown RBP9.93□□□□□ -0.82
CLN3-236ENST00000568558 EIF5AP63241 154 aaKnown RBP9.93□□□□□ -0.82
CLN3-236ENST00000568558 ZFP69Q49AA0 526 aa9.93□□□□□ -0.82
CLN3-236ENST00000568558 SMUG1Q53HV7 270 aa9.93□□□□□ -0.82
CLN3-236ENST00000568558 C9orf62Q8N4C0 152 aa9.93□□□□□ -0.82
CLN3-236ENST00000568558 FAM30AQ9NZY2 134 aa9.93□□□□□ -0.82
CLN3-236ENST00000568558 PAGE4O60829 102 aa9.92□□□□□ -0.82
CLN3-236ENST00000568558 H2AFB1P0C5Y9 115 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 LINC00694P0DN24 101 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 CCL20P78556 96 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 WFDC2Q14508 124 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 CST9LP1Q5W188 147 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 Q86TA4 180 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 Q8N3U1 123 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 TM2D2Q9BX73 214 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 PARLQ9H300 379 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 ARL2-SNX15V9GYD0 113 aa9.91□□□□□ -0.82
CLN3-236ENST00000568558 ZFP2Q6ZN57 461 aa9.9□□□□□ -0.82
CLN3-236ENST00000568558 NKX6-2Q9C056 277 aaPredicted RBP9.9□□□□□ -0.82
CLN3-236ENST00000568558 IGKV3D-20A0A0C4DH25 116 aa9.89□□□□□ -0.83
CLN3-236ENST00000568558 A8MWV9 139 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms