RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 KCNS1Q96KK3 526 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 FAM110AQ9BQ89 295 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 STAB1Q9NY15 2570 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 SRIP30626 198 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 TDRG1Q3Y452 100 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 C12orf54Q6X4T0 127 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 WFDC9Q8NEX5 89 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 CLUHP3Q96NS8 147 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 IGHV1OR15-1A0A075B7D0 117 aa15.61■□□□□ 0.09
CLN3-209ENST00000561689 RNASE3P12724 160 aaKnown RBP15.61■□□□□ 0.09
CLN3-209ENST00000561689 IGLL1P15814 213 aa15.61■□□□□ 0.09
CLN3-209ENST00000561689 JOSD1Q15040 202 aaPredicted RBP15.61■□□□□ 0.09
CLN3-209ENST00000561689 SPANXN1Q5VSR9 72 aa15.6■□□□□ 0.09
CLN3-209ENST00000561689 ZNF493Q6ZR52 646 aa15.6■□□□□ 0.09
CLN3-209ENST00000561689 GATD1Q8NB37 220 aa15.6■□□□□ 0.09
CLN3-209ENST00000561689 XCL2Q9UBD3 114 aa15.6■□□□□ 0.09
CLN3-209ENST00000561689 SERF1AO75920 110 aa15.6■□□□□ 0.09
CLN3-209ENST00000561689 HTN1P15515 57 aa15.6■□□□□ 0.09
CLN3-209ENST00000561689 Q8N1Y9 231 aa15.6■□□□□ 0.09
CLN3-209ENST00000561689 LOC102724200A0A096LPH7 203 aaPredicted RBP15.59■□□□□ 0.09
CLN3-209ENST00000561689 SHISA2Q6UWI4 295 aa15.59■□□□□ 0.09
CLN3-209ENST00000561689 MCRIP2Q9BUT9 160 aaKnown RBP15.59■□□□□ 0.09
CLN3-209ENST00000561689 M0R381 172 aa15.58■□□□□ 0.09
CLN3-209ENST00000561689 AMN1Q8IY45 258 aa15.58■□□□□ 0.09
CLN3-209ENST00000561689 DEFB125Q8N687 156 aa15.58■□□□□ 0.09
CLN3-209ENST00000561689 TMEM158Q8WZ71 300 aa15.58■□□□□ 0.09
CLN3-209ENST00000561689 SCRT2Q9NQ03 307 aa15.58■□□□□ 0.09
CLN3-209ENST00000561689 MDFICQ9P1T7 246 aa15.58■□□□□ 0.09
CLN3-209ENST00000561689 PHLDA3Q9Y5J5 127 aa15.58■□□□□ 0.09
CLN3-209ENST00000561689 RPL35AP18077 110 aaKnown RBP15.58■□□□□ 0.08
CLN3-209ENST00000561689 Q0VG73 95 aa15.58■□□□□ 0.08
CLN3-209ENST00000561689 DNLZQ5SXM8 178 aa15.58■□□□□ 0.08
CLN3-209ENST00000561689 ALKBH7Q9BT30 221 aaPredicted RBP15.58■□□□□ 0.08
CLN3-209ENST00000561689 COL6A5A8TX70 2615 aa15.57■□□□□ 0.08
CLN3-209ENST00000561689 IGHV3-16A0A0C4DH30 117 aa15.57■□□□□ 0.08
CLN3-209ENST00000561689 PRM2P04554 102 aa15.57■□□□□ 0.08
CLN3-209ENST00000561689 CACNG7P62955 275 aa15.57■□□□□ 0.08
CLN3-209ENST00000561689 BAGE3Q86Y29 109 aa15.57■□□□□ 0.08
CLN3-209ENST00000561689 IGHV4-4A0A075B6R2 117 aa15.56■□□□□ 0.08
CLN3-209ENST00000561689 CBY3A6NI87 242 aa15.56■□□□□ 0.08
CLN3-209ENST00000561689 INSP01308 110 aa15.56■□□□□ 0.08
CLN3-209ENST00000561689 MED14OSP0DP75 135 aa15.56■□□□□ 0.08
CLN3-209ENST00000561689 NUTF2P61970 127 aaKnown RBP15.56■□□□□ 0.08
CLN3-209ENST00000561689 FAM104BQ5XKR9 115 aa15.56■□□□□ 0.08
CLN3-209ENST00000561689 GTSCR1Q86UQ5 136 aa15.56■□□□□ 0.08
CLN3-209ENST00000561689 TMEM191AQ9H0A3 160 aa15.56■□□□□ 0.08
CLN3-209ENST00000561689 ESDP10768 282 aa15.55■□□□□ 0.08
CLN3-209ENST00000561689 EVI2AP22794 236 aa15.55■□□□□ 0.08
CLN3-209ENST00000561689 LINC01587Q99440 93 aa15.55■□□□□ 0.08
CLN3-209ENST00000561689 IQCJQ1A5X6 159 aa15.54■□□□□ 0.08
CLN3-209ENST00000561689 DMRTA1Q5VZB9 504 aa15.54■□□□□ 0.08
CLN3-209ENST00000561689 RCHY1Q96PM5 261 aa15.54■□□□□ 0.08
CLN3-209ENST00000561689 C18orf32Q8TCD1 76 aa15.53■□□□□ 0.08
CLN3-209ENST00000561689 GIG44P09565 113 aaPredicted RBP15.53■□□□□ 0.08
CLN3-209ENST00000561689 MRPL51Q4U2R6 128 aaKnown RBP15.53■□□□□ 0.08
CLN3-209ENST00000561689 TRGV11A0A075B6L2 103 aa15.52■□□□□ 0.07
CLN3-209ENST00000561689 OR10J3Q5JRS4 329 aa15.52■□□□□ 0.07
CLN3-209ENST00000561689 RNF185Q96GF1 192 aa15.52■□□□□ 0.07
CLN3-209ENST00000561689 C9orf85Q96MD7 179 aa15.52■□□□□ 0.07
CLN3-209ENST00000561689 IGHV3OR16-12A0A075B7B8 117 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 Q6ZWC4 215 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 SMIM15Q7Z3B0 74 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 C1orf158Q8N1D5 194 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 C20orf144Q9BQM9 153 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 TMEM208Q9BTX3 173 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 PRO1933Q9H354 126 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 D6R8Y8 96 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 RAB4AP20338 218 aa15.51■□□□□ 0.07
CLN3-209ENST00000561689 SMKR1H3BMG3 65 aa15.49■□□□□ 0.07
CLN3-209ENST00000561689 WIPF1O43516 503 aa15.49■□□□□ 0.07
CLN3-209ENST00000561689 NXPH4O95158 308 aa15.49■□□□□ 0.07
CLN3-209ENST00000561689 NCR2O95944 276 aa15.49■□□□□ 0.07
CLN3-209ENST00000561689 OXLD1Q5BKU9 147 aa15.49■□□□□ 0.07
CLN3-209ENST00000561689 C14orf178Q8N769 122 aaPredicted RBP15.49■□□□□ 0.07
CLN3-209ENST00000561689 CKS2P33552 79 aa15.48■□□□□ 0.07
CLN3-209ENST00000561689 GAS8-AS1O95177 125 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 ORMDL3Q8N138 153 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 SAMD10Q9BYL1 202 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 U3KQK5 164 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 MUC4Q99102 2169 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 SCGB1D1O95968 90 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 CTAG1AP78358 180 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 ZNF664Q8N3J9 261 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 LINC00467Q9BRT7 94 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 JPT2Q9H910 190 aa15.47■□□□□ 0.07
CLN3-209ENST00000561689 AZU1P20160 251 aa15.46■□□□□ 0.07
CLN3-209ENST00000561689 MORN3Q6PF18 240 aaPredicted RBP15.46■□□□□ 0.07
CLN3-209ENST00000561689 PRELID3AQ96N28 172 aa15.46■□□□□ 0.07
CLN3-209ENST00000561689 PKD1L1Q8TDX9 2849 aa15.46■□□□□ 0.06
CLN3-209ENST00000561689 PKIAP61925 76 aa15.45■□□□□ 0.06
CLN3-209ENST00000561689 AP1S3Q96PC3 154 aa15.45■□□□□ 0.06
CLN3-209ENST00000561689 TRAV26-2A0A0B4J265 109 aa15.45■□□□□ 0.06
CLN3-209ENST00000561689 PMCHP20382 165 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 ZNF876PQ49A33 203 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 C11orf72Q8NBR9 251 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 SYT8Q8NBV8 401 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 C1QTNF4Q9BXJ3 329 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 DPH3P1Q9H4G8 78 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 GATA1P15976 413 aaPredicted RBP15.44■□□□□ 0.06
CLN3-209ENST00000561689 ZNF415Q09FC8 603 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms