RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 DPH3P1Q9H4G8 78 aa12.53□□□□□ -0.4
TPM1-228ENST00000560975 RELNP78509 3460 aa12.53□□□□□ -0.4
TPM1-228ENST00000560975 SLC25A20O43772 301 aa12.53□□□□□ -0.4
TPM1-228ENST00000560975 IGHV3-30P01768 117 aa12.53□□□□□ -0.4
TPM1-228ENST00000560975 IGHV3-30-5P0DP03 117 aa12.53□□□□□ -0.4
TPM1-228ENST00000560975 C16orf92Q96LL3 132 aa12.53□□□□□ -0.4
TPM1-228ENST00000560975 ANKRD11Q6UB99 2663 aaPredicted RBP12.53□□□□□ -0.4
TPM1-228ENST00000560975 AJUBAQ96IF1 538 aa12.52□□□□□ -0.4
TPM1-228ENST00000560975 VCX2Q9H322 139 aa12.52□□□□□ -0.4
TPM1-228ENST00000560975 IGLV4-69A0A075B6H9 119 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 B9A039 149 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 TSHBP01222 138 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 HERVK_113P61574 105 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 IGFL3Q6UXB1 125 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 PRO1854Q9UHT4 67 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 TP53TG1Q9Y2A0 90 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 RPL39P62891 51 aaKnown RBP12.52□□□□□ -0.41
TPM1-228ENST00000560975 C9orf47Q6ZRZ4 202 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 SBSPONQ8IVN8 264 aa12.52□□□□□ -0.41
TPM1-228ENST00000560975 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.51□□□□□ -0.41
TPM1-228ENST00000560975 TMEM262E9PQX1 116 aa12.51□□□□□ -0.41
TPM1-228ENST00000560975 NHLRC4P0CG21 123 aaPredicted RBP12.51□□□□□ -0.41
TPM1-228ENST00000560975 BSNQ9UPA5 3926 aa12.51□□□□□ -0.41
TPM1-228ENST00000560975 CRLF1O75462 422 aa12.5□□□□□ -0.41
TPM1-228ENST00000560975 LY6G5BQ8NDX9 201 aa12.5□□□□□ -0.41
TPM1-228ENST00000560975 ASH1LQ9NR48 2969 aaKnown RBP12.5□□□□□ -0.41
TPM1-228ENST00000560975 TRAV4A0A0B4J268 109 aa12.5□□□□□ -0.41
TPM1-228ENST00000560975 C20orf173Q96LM9 149 aa12.5□□□□□ -0.41
TPM1-228ENST00000560975 METTL26Q96S19 204 aa12.5□□□□□ -0.41
TPM1-228ENST00000560975 CITED1Q99966 193 aa12.5□□□□□ -0.41
TPM1-228ENST00000560975 PRO3102Q9H379 93 aa12.5□□□□□ -0.41
TPM1-228ENST00000560975 SPTBN1Q01082 2364 aaKnown RBP12.5□□□□□ -0.41
TPM1-228ENST00000560975 G3V318 75 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 GNRH2O43555 120 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 CD3EP07766 207 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 GAGE2BQ13066 116 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 GAGE2EQ4V326 116 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 VMO1Q7Z5L0 202 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 CCDC140Q96MF4 163 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 GAGE2DQ9UEU5 116 aa12.49□□□□□ -0.41
TPM1-228ENST00000560975 A4D1N5 150 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 ODF3BA8MYP8 253 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 SNCGO76070 127 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 ASIPP42127 132 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 SLC25A29Q8N8R3 303 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 LINC01560Q8TB33 94 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 TIMD4Q96H15 378 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 ATP6V0E1O15342 81 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 NTN5Q8WTR8 489 aaPredicted RBP12.48□□□□□ -0.41
TPM1-228ENST00000560975 BEX4Q9NWD9 120 aaPredicted RBP12.48□□□□□ -0.41
TPM1-228ENST00000560975 IGHV3-64A0A075B6Q5 118 aa12.48□□□□□ -0.41
TPM1-228ENST00000560975 CCDC179H3BU77 68 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 RNASE4P34096 147 aaKnown RBP12.47□□□□□ -0.41
TPM1-228ENST00000560975 GPHB5Q86YW7 130 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 TRAV2A0A0B4J234 112 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 IGHV4-39P01824 125 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 PMVKQ15126 192 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 Q1RN00 199 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 Q8N9W7 124 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 ZNRF2Q8NHG8 242 aa12.47□□□□□ -0.41
TPM1-228ENST00000560975 AKAP13Q12802 2813 aa12.46□□□□□ -0.41
TPM1-228ENST00000560975 EIF4EBP3O60516 100 aaPredicted RBP12.46□□□□□ -0.41
TPM1-228ENST00000560975 NDUFV3P56181 108 aaKnown RBP12.46□□□□□ -0.41
TPM1-228ENST00000560975 C1orf122Q6ZSJ8 110 aa12.46□□□□□ -0.41
TPM1-228ENST00000560975 Q8N6K4 173 aa12.46□□□□□ -0.41
TPM1-228ENST00000560975 ANKHD1Q8IWZ3 2542 aaKnown RBP12.46□□□□□ -0.41
TPM1-228ENST00000560975 RHODO00212 210 aa12.46□□□□□ -0.42
TPM1-228ENST00000560975 ELANEP08246 267 aa12.46□□□□□ -0.42
TPM1-228ENST00000560975 LGALS3P17931 250 aaKnown RBP12.46□□□□□ -0.42
TPM1-228ENST00000560975 ZFAND2AQ8N6M9 145 aa12.46□□□□□ -0.42
TPM1-228ENST00000560975 FAM110DQ8TAY7 271 aaPredicted RBP12.46□□□□□ -0.42
TPM1-228ENST00000560975 JPT2Q9H910 190 aa12.46□□□□□ -0.42
TPM1-228ENST00000560975 IGKV3-7A0A075B6H7 116 aa12.45□□□□□ -0.42
TPM1-228ENST00000560975 J3QQQ9 107 aa12.45□□□□□ -0.42
TPM1-228ENST00000560975 TTC32Q5I0X7 151 aa12.45□□□□□ -0.42
TPM1-228ENST00000560975 SPTBN2O15020 2390 aa12.45□□□□□ -0.42
TPM1-228ENST00000560975 TRAV21A0A0B4J279 112 aa12.45□□□□□ -0.42
TPM1-228ENST00000560975 IGIPA6NJ69 53 aa12.45□□□□□ -0.42
TPM1-228ENST00000560975 F6UB75 175 aa12.45□□□□□ -0.42
TPM1-228ENST00000560975 SRD5A1P18405 259 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 Q8N1Y9 231 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 MRPL53Q96EL3 112 aaKnown RBP12.44□□□□□ -0.42
TPM1-228ENST00000560975 IGHV3-33P01772 117 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 PAPPA-AS1Q5QFB9 102 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 OPRPNQ99935 248 aaPredicted RBP12.44□□□□□ -0.42
TPM1-228ENST00000560975 CENPVL3A0A0U1RRI6 287 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 TEX49A0A1B0GTD5 131 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 F5H697 171 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 TCF15Q12870 199 aa12.44□□□□□ -0.42
TPM1-228ENST00000560975 MUC4Q99102 2169 aa12.43□□□□□ -0.42
TPM1-228ENST00000560975 A0A087WWL8 130 aa12.43□□□□□ -0.42
TPM1-228ENST00000560975 AMELXQ99217 191 aa12.43□□□□□ -0.42
TPM1-228ENST00000560975 OTOGLQ3ZCN5 2332 aa12.43□□□□□ -0.42
TPM1-228ENST00000560975 OR10J6PQ8NGY7 276 aa12.43□□□□□ -0.42
TPM1-228ENST00000560975 GAGE12JA6NER3 117 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 GAGE7O76087 117 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 GAGE12FP0CL80 117 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 GAGE12GP0CL81 117 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 GAGE12IP0CL82 117 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 RPL11P62913 178 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms