RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 IGHV3-53P01767 116 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 GPX1P07203 203 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 NBEAP1P0C6P0 100 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 RPS10P46783 165 aaKnown RBP5.8□□□□□ -1.48
USP28-215ENST00000545608 NDUFA6P56556 154 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 LINC00315P59091 139 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 PDE6HQ13956 83 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 AKR1C8PQ5T2L2 129 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 MIR17HGQ75NE6 70 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 Q8N1X5 172 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 ARL6IP6Q8N6S5 226 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 LYPD6BQ8NI32 183 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 NPCDR1Q9BY65 106 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 ZNF492Q9P255 531 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 ABCA13Q86UQ4 5058 aa5.8□□□□□ -1.48
USP28-215ENST00000545608 IGHV1OR15-1A0A075B7D0 117 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 E5RGE8 158 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 SIVA1O15304 175 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 RPL12P30050 165 aaKnown RBP5.79□□□□□ -1.48
USP28-215ENST00000545608 ZNF674Q2M3X9 581 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 IBA57Q5T440 356 aaKnown RBP5.79□□□□□ -1.48
USP28-215ENST00000545608 Q6ZRN7 208 aaPredicted RBP5.79□□□□□ -1.48
USP28-215ENST00000545608 OR5C1Q8NGR4 320 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 AAMDCQ9H7C9 122 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 SCRT2Q9NQ03 307 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 MRPL16Q9NX20 251 aaKnown RBP5.79□□□□□ -1.48
USP28-215ENST00000545608 TNFRSF18Q9Y5U5 241 aa5.79□□□□□ -1.48
USP28-215ENST00000545608 H0YIZ8 118 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 TCAPO15273 167 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 NDUFS6O75380 124 aaKnown RBP5.78□□□□□ -1.48
USP28-215ENST00000545608 NXPH4O95158 308 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 OR10J4P0C629 311 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 FUSP35637 526 aaKnown RBP eCLIP5.78□□□□□ -1.48
USP28-215ENST00000545608 CRYBA4P53673 196 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 FHL2Q14192 279 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 TMEM78Q5T7P6 136 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 MRPL52Q86TS9 123 aaKnown RBP5.78□□□□□ -1.48
USP28-215ENST00000545608 Q8TAT8 98 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 FXYD5Q96DB9 178 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 C14orf144Q96I85 54 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 PAXXQ9BUH6 204 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 OR5AC2Q9NZP5 309 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 ICOSQ9Y6W8 199 aa5.78□□□□□ -1.48
USP28-215ENST00000545608 GAGE12HA6NDE8 117 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 GCGP01275 180 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 ZNF138P52744 262 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 PNRC1Q12796 327 aaPredicted RBP5.77□□□□□ -1.49
USP28-215ENST00000545608 MUC21Q5SSG8 566 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 RPL7L1Q6DKI1 246 aaKnown RBP5.77□□□□□ -1.49
USP28-215ENST00000545608 LYPD5Q6UWN5 251 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 DPPA3Q6W0C5 159 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 OR10D4PQ8NGN7 298 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 TVP23CQ96ET8 276 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 C8orf49Q96NF6 230 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 WDR61Q9GZS3 305 aaKnown RBP5.77□□□□□ -1.49
USP28-215ENST00000545608 SLC25A31Q9H0C2 315 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 PRO0255Q9UI72 69 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 HHLA3Q9XRX5 114 aa5.77□□□□□ -1.49
USP28-215ENST00000545608 DNAH5Q8TE73 4624 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 APOBP04114 4563 aaKnown RBP5.76□□□□□ -1.49
USP28-215ENST00000545608 A0A1B0GV90 55 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 TAGLN2P37802 199 aaKnown RBP5.76□□□□□ -1.49
USP28-215ENST00000545608 RANP62826 216 aaKnown RBP5.76□□□□□ -1.49
USP28-215ENST00000545608 ZNF415Q09FC8 603 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 SLAQ13239 276 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 ZNF266Q14584 549 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 MRPL23Q16540 153 aaKnown RBP5.76□□□□□ -1.49
USP28-215ENST00000545608 PYY3Q5JQD4 70 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 HSD17B11Q8NBQ5 300 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 BTF3L4Q96K17 158 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 MRPL32Q9BYC8 188 aaKnown RBP5.76□□□□□ -1.49
USP28-215ENST00000545608 TMEM242Q9NWH2 141 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 MDFICQ9P1T7 246 aa5.76□□□□□ -1.49
USP28-215ENST00000545608 TRGV11A0A075B6L2 103 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 TRGV4A0A0C4DH28 118 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 TRBV7-9A0A0J9YWB2 115 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 KRTAP23-1A1A580 65 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 OR7C2O60412 319 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 AKR1C3P42330 323 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 CSN1S1P47710 185 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 Q6ZSN1 163 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 NEGR1Q7Z3B1 354 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 ISOC2Q96AB3 205 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 ZNF479Q96JC4 524 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 ACTR3CQ9C0K3 210 aaPredicted RBP5.75□□□□□ -1.49
USP28-215ENST00000545608 CTDSP1Q9GZU7 261 aa5.75□□□□□ -1.49
USP28-215ENST00000545608 RBAKDNA6NC62 111 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 RBFOX3A6NFN3 312 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 C17orf112F2Z3M2 114 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 K7EQD1 137 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 M0R143 59 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 DNAH10OSP0CZ25 163 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 XGP55808 180 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 TMEM183BQ1AE95 376 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 FFAR4Q5NUL3 377 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 Q6AWC8 147 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 TMEM183AQ8IXX5 376 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 HIST3H2BBQ8N257 126 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 LYPD1Q8N2G4 141 aa5.74□□□□□ -1.49
USP28-215ENST00000545608 OR10G4Q8NGN3 311 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms