RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 SPA17Q15506 151 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 Q6Q795 121 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 LCA10Q71F78 164 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 SBSPONQ8IVN8 264 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 Q8N814 137 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 OR51A2Q8NGJ7 313 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 HIST1H2BLQ99880 126 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 TLNRD1Q9H1K6 362 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 UCK1Q9HA47 277 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 C14orf132Q9NPU4 83 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 GLTPQ9NZD2 209 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 FBXO5Q9UKT4 447 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 PRELID3BQ9Y3B1 194 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 MUC5ACP98088 5654 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 DEFB108AA8MXU0 73 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 TMEM114B3SHH9 223 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 LYZL6O75951 148 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 DEFA1P59665 94 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 RNASE10Q5GAN6 216 aaKnown RBP0.55□□□□□ -2.32
PRKDC-210ENST00000541488 C1orf137Q5JT78 98 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 GDF5OSQ5U4N7 250 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 LYRM7Q5U5X0 104 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 OR52L1Q8NGH7 329 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 OR8D4Q8NGM9 314 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 OR2T10Q8NGZ9 312 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 FAM172AQ8WUF8 416 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 BTF3L4Q96K17 158 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 C14orf105Q9NVL8 296 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 DNAH8Q96JB1 4490 aa0.55□□□□□ -2.32
PRKDC-210ENST00000541488 MUC17Q685J3 4493 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 TRBV6-8A0A0A6YYG3 113 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 CLDN25C9JDP6 229 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 CYB5BO43169 146 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 E2F6O75461 281 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 OR7C1O76099 320 aaPredicted RBP0.54□□□□□ -2.32
PRKDC-210ENST00000541488 ESRGQ1W209 222 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 KRTAP19-6Q3LI70 58 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 BRMS1LQ5PSV4 323 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 LINC00301Q8NCQ3 95 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 OR52R1Q8NGF1 315 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 GNPDA2Q8TDQ7 276 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 OBSCN-AS1Q96MR7 158 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 PRAP1Q96NZ9 151 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 LINC00467Q9BRT7 94 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 KIFC1Q9BW19 673 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 NMNAT1Q9HAN9 279 aaPredicted RBP0.54□□□□□ -2.32
PRKDC-210ENST00000541488 PARVBQ9HBI1 364 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 ACER3Q9NUN7 267 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 IDI2-AS1Q9NZ38 188 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 ZFP30Q9Y2G7 519 aa0.54□□□□□ -2.32
PRKDC-210ENST00000541488 V9GYY5 206 aaPredicted RBP0.54□□□□□ -2.32
PRKDC-210ENST00000541488 TRAV17A0A0B4J275 112 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 SPTY2D1-AS1A0A0U1RR47 76 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 CLPSL1A2RUU4 121 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 ZNF736B4DX44 427 aaPredicted RBP0.53□□□□□ -2.32
PRKDC-210ENST00000541488 C10orf142B7Z368 130 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 LYNX1G3V0Z9 82 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 UQCRHP07919 91 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 SMIM17P0DL12 118 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 MT1HL1P0DM35 61 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 HMGA1P17096 107 aaKnown RBP0.53□□□□□ -2.32
PRKDC-210ENST00000541488 MYL6P60660 151 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 CNBPP62633 177 aaKnown RBP0.53□□□□□ -2.32
PRKDC-210ENST00000541488 RHOBP62745 196 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 FADDQ13158 208 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 CIRBPQ14011 172 aaKnown RBP0.53□□□□□ -2.32
PRKDC-210ENST00000541488 MPV17LQ2QL34 196 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 SOSTDC1Q6X4U4 206 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 OR11H6Q8NGC7 330 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 SLC25A40Q8TBP6 338 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 WFDC5Q8TCV5 224 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 PATE1Q8WXA2 126 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 ADAT3Q96EY9 351 aaPredicted RBP0.53□□□□□ -2.32
PRKDC-210ENST00000541488 YPEL2Q96QA6 119 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 C6orf62Q9GZU0 229 aaPredicted RBP0.53□□□□□ -2.32
PRKDC-210ENST00000541488 RNASE7Q9H1E1 156 aaKnown RBP0.53□□□□□ -2.32
PRKDC-210ENST00000541488 TMEM133Q9H2Q1 129 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 CENPHQ9H3R5 247 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 UQCC1Q9NVA1 299 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 UBAP1Q9NZ09 502 aa0.53□□□□□ -2.32
PRKDC-210ENST00000541488 TRBV19A0A075B6N1 114 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 TRGV10A0A0A0MS01 117 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 TRAV4A0A0B4J268 109 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 C1orf196B1AJZ1 125 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 S100A6P06703 90 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 CTXN2P0C2S0 81 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 SPRR2EP22531 72 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 ERP29P30040 261 aaKnown RBP0.52□□□□□ -2.33
PRKDC-210ENST00000541488 SPRR2BP35325 72 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 SPRR2AP35326 72 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 EIF5AP63241 154 aaKnown RBP0.52□□□□□ -2.33
PRKDC-210ENST00000541488 LIN52Q52LA3 116 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 CCL4L1Q8NHW4 92 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 TMEM254Q8TBM7 123 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 DEFB104AQ8WTQ1 72 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 SIGMAR1Q99720 223 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 BPESC1Q9GZL8 116 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 BCL2L10Q9HD36 194 aa0.52□□□□□ -2.33
PRKDC-210ENST00000541488 UTP11Q9Y3A2 253 aaKnown RBP0.52□□□□□ -2.33
PRKDC-210ENST00000541488 NINQ8N4C6 2090 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms