RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-215	ENST00000533440	LSM5	Q9Y4Y9	91 aa	Known RBP	4.96	□□□□□ -1.62
NXF1-215	ENST00000533440		V9GYH0	126 aa		4.96	□□□□□ -1.62
NXF1-215	ENST00000533440	IGSF23	A1L1A6	192 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	USP17L23	D6RBM5	183 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440		F6UZH7	168 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	FGF8	P55075	233 aa	Predicted RBP	4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	KRTAP10-8	P60410	259 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	RPL19	P84098	196 aa	Known RBP	4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	ATP6V1F	Q16864	119 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	SPANXN2	Q5MJ10	180 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	ENHO	Q6UWT2	76 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	TMEM252	Q8N6L7	170 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	ANAPC16	Q96DE5	110 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	ZC2HC1A	Q96GY0	325 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	C1orf43	Q9BWL3	253 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	SAMD10	Q9BYL1	202 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	PARL	Q9H300	379 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	DPH3P1	Q9H4G8	78 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	LYRM2	Q9NU23	88 aa	Predicted RBP	4.95	□□□□□ -1.62
NXF1-215	ENST00000533440	C11orf21	Q9P2W6	132 aa		4.95	□□□□□ -1.62
NXF1-215	ENST00000533440		A0A087WX48	190 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440		A0A0J9YXV3	536 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	CCS	O14618	274 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	OR7C2	O60412	319 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	RNASE3	P12724	160 aa	Known RBP	4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	HBG1	P69891	147 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	HBG2	P69892	147 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	PIK3CD-AS1	Q5SR53	167 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	UFSP1	Q6NVU6	142 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	STX12	Q86Y82	276 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	ARL6IP6	Q8N6S5	226 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	C14orf178	Q8N769	122 aa	Predicted RBP	4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	OR2T35	Q8NGX2	323 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	TREM1	Q9NP99	234 aa		4.94	□□□□□ -1.62
NXF1-215	ENST00000533440	KRTAP9-6	A0A140TA67	174 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	NAP1L6	A6NFF2	107 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440		A8MWV9	139 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	PVALB	P20472	110 aa	Predicted RBP	4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	ZNF80	P51504	273 aa	Predicted RBP	4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	UBE2L3	P68036	154 aa	Known RBP	4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	GOLT1A	Q6ZVE7	132 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	RNF185	Q96GF1	192 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	HYLS1	Q96M11	299 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	BCL7B	Q9BQE9	202 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440	OTOR	Q9NRC9	128 aa		4.93	□□□□□ -1.62
NXF1-215	ENST00000533440		A0A087WYN8	130 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	PGP	A6NDG6	321 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	TAAR5	O14804	337 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	BTC	P35070	178 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	TMBIM6	P55061	237 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	IL15RA	Q13261	267 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	ANKRD39	Q53RE8	183 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	WDR73	Q6P4I2	378 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	KCNIP4	Q6PIL6	250 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	TMEM75	Q8N9X5	138 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	OR10G7	Q8NGN6	311 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	CMTM2	Q8TAZ6	248 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	THAP6	Q8TBB0	222 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	NMES1	Q9C002	83 aa		4.92	□□□□□ -1.62
NXF1-215	ENST00000533440	FAM25E	A8MYX2	175 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440		H3BS24	57 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	PHOX2A	O14813	284 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	HLA-DQA1	P01909	254 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	CRP	P02741	224 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	CNBP	P62633	177 aa	Known RBP	4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	FAM74A1	Q5RGS3	127 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	KRTAP26-1	Q6PEX3	210 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	SPACA4	Q8TDM5	124 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	MRPS26	Q9BYN8	205 aa	Known RBP	4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	JPT2	Q9H910	190 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	KCNIP2	Q9NS61	270 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	PLAC8	Q9NZF1	115 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440	KIF25-AS1	Q9Y6Z4	181 aa		4.91	□□□□□ -1.62
NXF1-215	ENST00000533440		H3BMQ9	156 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	GCG	P01275	180 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	S100A10	P60903	97 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	NHLH2	Q02577	135 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	RAB32	Q13637	225 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	MIA	Q16674	131 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	LGALSL	Q3ZCW2	172 aa	Predicted RBP	4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	MPV17L2	Q567V2	206 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	KHDC3L	Q587J8	217 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	C15orf54	Q8N8G6	183 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	CLRN3	Q8NCR9	226 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	OR5C1	Q8NGR4	320 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	OR2G3	Q8NGZ4	309 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	C7orf33	Q8WU49	177 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	NDFIP1	Q9BT67	221 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	WDR61	Q9GZS3	305 aa	Known RBP	4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	OR5AC2	Q9NZP5	309 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	MBD2	Q9UBB5	411 aa		4.9	□□□□□ -1.63
NXF1-215	ENST00000533440	IGHV3-64	A0A075B6Q5	118 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	IGKV3D-20	A0A0C4DH25	116 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	TMEM262	E9PQX1	116 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	RHOD	O00212	210 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	ANG	P03950	147 aa	Known RBP	4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	CHTF8	P0CG12	524 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	TAS2R45	P59539	299 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	UBE2D3	P61077	147 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	UBE2D2	P62837	147 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 160.1 ms