RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 C7orf77A4D0Y5 90 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 TMEM189A5PLL7 270 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 A8MWL6 223 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 M0R036 132 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 GATCO43716 136 aaKnown RBP5.36□□□□□ -1.55
CD44-228ENST00000528455 CA1P00915 261 aaPredicted RBP5.36□□□□□ -1.55
CD44-228ENST00000528455 CXCL1P09341 107 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 FRMD6-AS1P0C7T7 363 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 NHLRC4P0CG21 123 aaPredicted RBP5.36□□□□□ -1.55
CD44-228ENST00000528455 FXYD7P58549 80 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 BTN1A1Q13410 526 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 RHEBQ15382 184 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 ANXA2RQ3ZCQ2 193 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 PRR9Q5T870 116 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 PRR27Q6MZM9 219 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 RNF183Q96D59 192 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 IMMP2LQ96T52 175 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 LINC01587Q99440 93 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 GFRA4Q9GZZ7 299 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 RNASE7Q9H1E1 156 aaKnown RBP5.36□□□□□ -1.55
CD44-228ENST00000528455 TP53TG1Q9Y2A0 90 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 A0A1W2PPQ1 181 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 CXorf65A6NEN9 183 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 ZNF705GA8MUZ8 300 aaPredicted RBP5.35□□□□□ -1.55
CD44-228ENST00000528455 F2Z2F3 143 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 J3KRW8 73 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 RNF212Q495C1 297 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 WDR73Q6P4I2 378 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 ZNF493Q6ZR52 646 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 OR2D3Q8NGH3 330 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 TMEM208Q9BTX3 173 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 C11orf21Q9P2W6 132 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 V9GYV3 84 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 TENM3Q9P273 2699 aa5.35□□□□□ -1.55
CD44-228ENST00000528455 SMIM27A0A1W2PRY6 76 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 GNRH2O43555 120 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 SPRY2O43597 315 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 ATP6V1G1O75348 118 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 RBMY1A1P0DJD3 496 aaKnown RBP5.34□□□□□ -1.55
CD44-228ENST00000528455 RBMY1CP0DJD4 496 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 RBMY1FQ15415 496 aaKnown RBP5.34□□□□□ -1.55
CD44-228ENST00000528455 Q6ZQT7 251 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 TSKUQ8WUA8 353 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 RCHY1Q96PM5 261 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 RPP21Q9H633 154 aaKnown RBP5.34□□□□□ -1.55
CD44-228ENST00000528455 RPS10P5Q9NQ39 176 aa5.34□□□□□ -1.55
CD44-228ENST00000528455 CBY3A6NI87 242 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 RRN3P1Q2M238 152 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 MUC21Q5SSG8 566 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 SBSPONQ8IVN8 264 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 PTH2Q96A98 100 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 OVOL2Q9BRP0 275 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 SPXQ9BT56 116 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 IL36BQ9NZH7 164 aa5.33□□□□□ -1.56
CD44-228ENST00000528455 IGHV3OR16-12A0A075B7B8 117 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 IGHV3-16A0A0C4DH30 117 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 TYMSP04818 313 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 OR5AL1P0C617 328 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 ARMS2P0C7Q2 107 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 IGLC6P0CF74 106 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 MIFP14174 115 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 HTN1P15515 57 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 AZU1P20160 251 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 S100A4P26447 101 aaKnown RBP5.32□□□□□ -1.56
CD44-228ENST00000528455 ASIPP42127 132 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 RPL19P84098 196 aaKnown RBP5.32□□□□□ -1.56
CD44-228ENST00000528455 DAZ2Q13117 558 aaKnown RBP5.32□□□□□ -1.56
CD44-228ENST00000528455 PIK3CD-AS1Q5SR53 167 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 OR11H2Q8NH07 326 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 TMEM263Q8WUH6 116 aaKnown RBP5.32□□□□□ -1.56
CD44-228ENST00000528455 TM2D3Q9BRN9 247 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 NDUFAF3Q9BU61 184 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 SCRT2Q9NQ03 307 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 SMCO4Q9NRQ5 59 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 MDFICQ9P1T7 246 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 NAT8BQ9UHF3 227 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 NAGKQ9UJ70 344 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 U3KQK5 164 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 NBEAL2Q6ZNJ1 2754 aa5.32□□□□□ -1.56
CD44-228ENST00000528455 IGHV4-4A0A075B6R2 117 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 TRAV9-1A0A075B6T8 112 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 GRIFINA4D1Z8 144 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 HIGD1CA8MV81 97 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 SNAI2O43623 268 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 RNASE3P12724 160 aaKnown RBP5.31□□□□□ -1.56
CD44-228ENST00000528455 S100PP25815 95 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 DEFB135Q30KP9 77 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 LGALS9BQ3B8N2 356 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 KCNIP4Q6PIL6 250 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 ATRAIDQ6UW56 229 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 LYZL1Q6UWQ5 148 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 FER1L6-AS1Q8NA97 138 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 C11orf72Q8NBR9 251 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 NUP35Q8NFH5 326 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 RNASE8Q8TDE3 154 aaKnown RBP5.31□□□□□ -1.56
CD44-228ENST00000528455 GTSF1Q8WW33 167 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 C16orf74Q96GX8 76 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 BTF3L4Q96K17 158 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 C9orf85Q96MD7 179 aa5.31□□□□□ -1.56
CD44-228ENST00000528455 CNFNQ9BYD5 112 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms