RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ADCYAP1P18509 176 aa20.99■□□□□ 0.95
LIMCH1-211ENST00000509638 PHLDA1Q8WV24 401 aaPredicted RBP20.99■□□□□ 0.95
LIMCH1-211ENST00000509638 XKRY2A2RUG3 117 aa20.98■□□□□ 0.95
LIMCH1-211ENST00000509638 ZNF876PQ49A33 203 aa20.98■□□□□ 0.95
LIMCH1-211ENST00000509638 RASL10AQ92737 203 aa20.98■□□□□ 0.95
LIMCH1-211ENST00000509638 GATCO43716 136 aaKnown RBP20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 MED14OSP0DP75 135 aa20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 SCRT2Q9NQ03 307 aa20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 HTN3P15516 51 aa20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 ZFAND6Q6FIF0 208 aa20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 SFRP2Q96HF1 295 aa20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 OSTCQ9NRP0 149 aa20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 PHLDA3Q9Y5J5 127 aa20.97■□□□□ 0.95
LIMCH1-211ENST00000509638 TRAV10A0A0B4J240 114 aa20.96■□□□□ 0.95
LIMCH1-211ENST00000509638 F8W036 122 aa20.96■□□□□ 0.95
LIMCH1-211ENST00000509638 C15orf54Q8N8G6 183 aa20.95■□□□□ 0.94
LIMCH1-211ENST00000509638 C18orf15Q96N68 181 aa20.95■□□□□ 0.94
LIMCH1-211ENST00000509638 TPPP3Q9BW30 176 aa20.95■□□□□ 0.94
LIMCH1-211ENST00000509638 DEFB131BA0A096LNP1 70 aa20.94■□□□□ 0.94
LIMCH1-211ENST00000509638 ATP5G1P05496 136 aa20.94■□□□□ 0.94
LIMCH1-211ENST00000509638 FER1L6-AS1Q8NA97 138 aa20.94■□□□□ 0.94
LIMCH1-211ENST00000509638 NACAE9PAV3 2078 aa20.94■□□□□ 0.94
LIMCH1-211ENST00000509638 TENM2Q9NT68 2774 aa20.94■□□□□ 0.94
LIMCH1-211ENST00000509638 SNAI2O43623 268 aa20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 OR5AL1P0C617 328 aa20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 IGLC6P0CF74 106 aa20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 CT83Q5H943 113 aa20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 PNRC1Q12796 327 aaPredicted RBP20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 OR10AG1Q8NH19 301 aa20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 PTH2Q96A98 100 aa20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 SSBP4Q9BWG4 385 aaPredicted RBP20.93■□□□□ 0.94
LIMCH1-211ENST00000509638 NUPR2A6NF83 97 aa20.92■□□□□ 0.94
LIMCH1-211ENST00000509638 M0R381 172 aa20.92■□□□□ 0.94
LIMCH1-211ENST00000509638 SYT8Q8NBV8 401 aa20.92■□□□□ 0.94
LIMCH1-211ENST00000509638 MUC21A0A0G2JKD1 596 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 MUC21A0A140T8X8 626 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 IGHV3-53P01767 116 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 DMRTA1Q5VZB9 504 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 ZFP82Q8N141 532 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 OR10G8Q8NGN5 311 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 SEC11CQ9BY50 192 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 V9GYV3 84 aa20.91■□□□□ 0.94
LIMCH1-211ENST00000509638 NDUFAF3Q9BU61 184 aa20.9■□□□□ 0.94
LIMCH1-211ENST00000509638 A8MWL6 223 aa20.89■□□□□ 0.94
LIMCH1-211ENST00000509638 C3orf84H3BNL1 204 aa20.89■□□□□ 0.94
LIMCH1-211ENST00000509638 CEMP1Q6PRD7 247 aaPredicted RBP20.89■□□□□ 0.94
LIMCH1-211ENST00000509638 A0A1W2PPQ1 181 aa20.89■□□□□ 0.93
LIMCH1-211ENST00000509638 F5H768 121 aa20.89■□□□□ 0.93
LIMCH1-211ENST00000509638 PIK3CD-AS1Q5SR53 167 aa20.89■□□□□ 0.93
LIMCH1-211ENST00000509638 POM121L12Q8N7R1 296 aa20.89■□□□□ 0.93
LIMCH1-211ENST00000509638 GTSF1Q8WW33 167 aa20.89■□□□□ 0.93
LIMCH1-211ENST00000509638 DYNC2H1Q8NCM8 4307 aaKnown RBP20.88■□□□□ 0.93
LIMCH1-211ENST00000509638 TRAV4A0A0B4J268 109 aa20.88■□□□□ 0.93
LIMCH1-211ENST00000509638 NXPH4O95158 308 aa20.88■□□□□ 0.93
LIMCH1-211ENST00000509638 CTRLP40313 264 aa20.88■□□□□ 0.93
LIMCH1-211ENST00000509638 SPANXN1Q5VSR9 72 aa20.88■□□□□ 0.93
LIMCH1-211ENST00000509638 HOXA5P20719 270 aa20.87■□□□□ 0.93
LIMCH1-211ENST00000509638 OR4C5Q8NGB2 326 aa20.87■□□□□ 0.93
LIMCH1-211ENST00000509638 ZNF479Q96JC4 524 aa20.87■□□□□ 0.93
LIMCH1-211ENST00000509638 SSTP61278 116 aa20.86■□□□□ 0.93
LIMCH1-211ENST00000509638 CASC10Q5T4H9 136 aa20.86■□□□□ 0.93
LIMCH1-211ENST00000509638 LYZL1Q6UWQ5 148 aa20.86■□□□□ 0.93
LIMCH1-211ENST00000509638 TSKUQ8WUA8 353 aa20.86■□□□□ 0.93
LIMCH1-211ENST00000509638 CFAP126Q5VTH2 177 aa20.85■□□□□ 0.93
LIMCH1-211ENST00000509638 F2Z2F3 143 aa20.85■□□□□ 0.93
LIMCH1-211ENST00000509638 JPT2Q9H910 190 aa20.85■□□□□ 0.93
LIMCH1-211ENST00000509638 A8MWV9 139 aa20.84■□□□□ 0.93
LIMCH1-211ENST00000509638 RS1O15537 224 aa20.84■□□□□ 0.93
LIMCH1-211ENST00000509638 KLK5Q9Y337 293 aaPredicted RBP20.84■□□□□ 0.93
LIMCH1-211ENST00000509638 C10orf91Q5T1B1 145 aa20.83■□□□□ 0.92
LIMCH1-211ENST00000509638 GFRA4Q9GZZ7 299 aa20.83■□□□□ 0.92
LIMCH1-211ENST00000509638 RNF212Q495C1 297 aa20.82■□□□□ 0.92
LIMCH1-211ENST00000509638 CARHSP1Q9Y2V2 147 aaKnown RBP20.82■□□□□ 0.92
LIMCH1-211ENST00000509638 HIGD1CA8MV81 97 aa20.81■□□□□ 0.92
LIMCH1-211ENST00000509638 IGLL5B9A064 214 aa20.81■□□□□ 0.92
LIMCH1-211ENST00000509638 CACNG7P62955 275 aa20.81■□□□□ 0.92
LIMCH1-211ENST00000509638 SLC7A5P1Q8MH63 180 aa20.81■□□□□ 0.92
LIMCH1-211ENST00000509638 PGLYRP4Q96LB8 373 aa20.81■□□□□ 0.92
LIMCH1-211ENST00000509638 TRGV4A0A0C4DH28 118 aa20.8■□□□□ 0.92
LIMCH1-211ENST00000509638 TMEM88Q6PEY1 159 aa20.8■□□□□ 0.92
LIMCH1-211ENST00000509638 CNFNQ9BYD5 112 aa20.8■□□□□ 0.92
LIMCH1-211ENST00000509638 IGHV3-73A0A0B4J1V6 119 aa20.8■□□□□ 0.92
LIMCH1-211ENST00000509638 FAM231BA6NCW3 169 aa20.8■□□□□ 0.92
LIMCH1-211ENST00000509638 FHL2Q14192 279 aa20.8■□□□□ 0.92
LIMCH1-211ENST00000509638 SAMD10Q9BYL1 202 aa20.8■□□□□ 0.92
LIMCH1-211ENST00000509638 IGHV4-4A0A075B6R2 117 aa20.79■□□□□ 0.92
LIMCH1-211ENST00000509638 PPP1R2P9O14990 202 aa20.79■□□□□ 0.92
LIMCH1-211ENST00000509638 MT-ND4LP03901 98 aa20.79■□□□□ 0.92
LIMCH1-211ENST00000509638 FAM74A4Q5TZK3 123 aa20.79■□□□□ 0.92
LIMCH1-211ENST00000509638 AP1S3Q96PC3 154 aa20.79■□□□□ 0.92
LIMCH1-211ENST00000509638 PLECQ15149 4684 aaKnown RBP20.78■□□□□ 0.92
LIMCH1-211ENST00000509638 TRAV26-1A0A087WT03 109 aa20.78■□□□□ 0.92
LIMCH1-211ENST00000509638 A0A087WWL8 130 aa20.78■□□□□ 0.92
LIMCH1-211ENST00000509638 FOXA3P55318 350 aaPredicted RBP20.78■□□□□ 0.92
LIMCH1-211ENST00000509638 MSRB1Q9NZV6 116 aa20.78■□□□□ 0.92
LIMCH1-211ENST00000509638 SMIM27A0A1W2PRY6 76 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 FAM210BQ96KR6 192 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 A0A0J9YY99 117 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 RHODO00212 210 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 NTF3P20783 257 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms