RNA–Protein interactions for RNA: ENST00000505676.5

TRAPPC11-204, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best)

Gene TRAPPC11, Length 2,244 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-204ENST00000505676 TSSC4Q9Y5U2 329 aaPredicted RBP12.86□□□□□ -0.35
TRAPPC11-204ENST00000505676 HLA-DRB4X5D2U9 266 aa12.86□□□□□ -0.35
TRAPPC11-204ENST00000505676 GNRH2O43555 120 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 SMIM17P0DL12 118 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 DLX4Q92988 240 aaPredicted RBP12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 IFI27L1Q96BM0 104 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 CLUHP3Q96NS8 147 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 IGHV1OR15-1A0A075B7D0 117 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 TRAV12-3A0A0B4J271 114 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 CD7P09564 240 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 AMTNQ6UX39 209 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 C9orf85Q96MD7 179 aa12.85□□□□□ -0.35
TRAPPC11-204ENST00000505676 APCP25054 2843 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 NDUFA7O95182 113 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 HILS1P60008 231 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 RPL32P62910 135 aaKnown RBP12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 KIR3DS1Q14943 382 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 SVEP1Q4LDE5 3571 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 LINC01549A6NIU2 74 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 ATP5LO75964 103 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 LAGE3Q14657 143 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 DEFB114Q30KQ6 69 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 ATOH7Q8N100 152 aa12.84□□□□□ -0.35
TRAPPC11-204ENST00000505676 IGHV3-16A0A0C4DH30 117 aa12.83□□□□□ -0.36
TRAPPC11-204ENST00000505676 IGLL1P15814 213 aa12.83□□□□□ -0.36
TRAPPC11-204ENST00000505676 G0S2P27469 103 aa12.83□□□□□ -0.36
TRAPPC11-204ENST00000505676 ORMDL2Q53FV1 153 aa12.83□□□□□ -0.36
TRAPPC11-204ENST00000505676 LURAP1LQ8IV03 231 aa12.83□□□□□ -0.36
TRAPPC11-204ENST00000505676 SMIM2Q9BVW6 85 aa12.83□□□□□ -0.36
TRAPPC11-204ENST00000505676 HNRNPA3P51991 378 aaKnown RBP12.82□□□□□ -0.36
TRAPPC11-204ENST00000505676 CMC4P56277 68 aaPredicted RBP12.82□□□□□ -0.36
TRAPPC11-204ENST00000505676 TMEM61Q8N0U2 210 aa12.82□□□□□ -0.36
TRAPPC11-204ENST00000505676 MRPS16Q9Y3D3 137 aaKnown RBP12.82□□□□□ -0.36
TRAPPC11-204ENST00000505676 SELENOKQ9Y6D0 94 aa12.82□□□□□ -0.36
TRAPPC11-204ENST00000505676 DEFB131AP59861 70 aa12.82□□□□□ -0.36
TRAPPC11-204ENST00000505676 SUMO2P61956 95 aaKnown RBP12.82□□□□□ -0.36
TRAPPC11-204ENST00000505676 CCL24O00175 119 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 Q6ZN92 141 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 C14orf178Q8N769 122 aaPredicted RBP12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 RAX2Q96IS3 184 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 PMCHL2Q9BQD1 86 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 H3BMM0 161 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 GATA1P15976 413 aaPredicted RBP12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 SPINK13Q1W4C9 94 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 LINC01006Q8NI28 216 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 LINC00467Q9BRT7 94 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 GOLT1BQ9Y3E0 138 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 KIF25-AS1Q9Y6Z4 181 aa12.81□□□□□ -0.36
TRAPPC11-204ENST00000505676 GAS8-AS1O95177 125 aa12.8□□□□□ -0.36
TRAPPC11-204ENST00000505676 PIK3CD-AS1Q5SR53 167 aa12.8□□□□□ -0.36
TRAPPC11-204ENST00000505676 SNHG12Q9BXW3 62 aa12.8□□□□□ -0.36
TRAPPC11-204ENST00000505676 CELSR1Q9NYQ6 3014 aa12.8□□□□□ -0.36
TRAPPC11-204ENST00000505676 RASL10AQ92737 203 aa12.8□□□□□ -0.36
TRAPPC11-204ENST00000505676 TRAV26-2A0A0B4J265 109 aa12.79□□□□□ -0.36
TRAPPC11-204ENST00000505676 MGPP08493 103 aa12.79□□□□□ -0.36
TRAPPC11-204ENST00000505676 MAP6D1Q9H9H5 199 aa12.79□□□□□ -0.36
TRAPPC11-204ENST00000505676 IGKV3-20P01619 116 aa12.78□□□□□ -0.36
TRAPPC11-204ENST00000505676 TMEM158Q8WZ71 300 aa12.78□□□□□ -0.36
TRAPPC11-204ENST00000505676 CENPEQ02224 2701 aa12.78□□□□□ -0.36
TRAPPC11-204ENST00000505676 CD28P10747 220 aa12.78□□□□□ -0.36
TRAPPC11-204ENST00000505676 Q8N1Y9 231 aa12.78□□□□□ -0.36
TRAPPC11-204ENST00000505676 PTH2Q96A98 100 aa12.78□□□□□ -0.36
TRAPPC11-204ENST00000505676 ITPR3Q14573 2671 aa12.77□□□□□ -0.36
TRAPPC11-204ENST00000505676 TRAV12-2A0A075B6T6 113 aa12.77□□□□□ -0.36
TRAPPC11-204ENST00000505676 H0Y8G0 127 aa12.77□□□□□ -0.36
TRAPPC11-204ENST00000505676 MAJINQ3KP22 176 aa12.77□□□□□ -0.36
TRAPPC11-204ENST00000505676 CD300EQ496F6 205 aaPredicted RBP12.77□□□□□ -0.36
TRAPPC11-204ENST00000505676 EREGO14944 169 aa12.77□□□□□ -0.37
TRAPPC11-204ENST00000505676 LINC00315P59091 139 aa12.77□□□□□ -0.37
TRAPPC11-204ENST00000505676 SLC25A34Q6PIV7 304 aa12.77□□□□□ -0.37
TRAPPC11-204ENST00000505676 DUX3Q96PT4 197 aa12.77□□□□□ -0.37
TRAPPC11-204ENST00000505676 ZNF256Q9Y2P7 627 aaPredicted RBP12.76□□□□□ -0.37
TRAPPC11-204ENST00000505676 TRBV6-5A0A0K0K1A5 114 aa12.76□□□□□ -0.37
TRAPPC11-204ENST00000505676 KNCNA6PVL3 124 aa12.76□□□□□ -0.37
TRAPPC11-204ENST00000505676 CITED2Q99967 270 aaPredicted RBP12.76□□□□□ -0.37
TRAPPC11-204ENST00000505676 hDV102S1A0JD36 115 aa12.75□□□□□ -0.37
TRAPPC11-204ENST00000505676 TCAPO15273 167 aa12.75□□□□□ -0.37
TRAPPC11-204ENST00000505676 NUDT3O95989 172 aa12.75□□□□□ -0.37
TRAPPC11-204ENST00000505676 ZANQ9Y493 2812 aa12.75□□□□□ -0.37
TRAPPC11-204ENST00000505676 CSMD2Q7Z408 3487 aa12.75□□□□□ -0.37
TRAPPC11-204ENST00000505676 CBY3A6NI87 242 aa12.74□□□□□ -0.37
TRAPPC11-204ENST00000505676 FAM110AQ9BQ89 295 aa12.74□□□□□ -0.37
TRAPPC11-204ENST00000505676 EDA2RQ9HAV5 297 aa12.74□□□□□ -0.37
TRAPPC11-204ENST00000505676 CHD6Q8TD26 2715 aa12.74□□□□□ -0.37
TRAPPC11-204ENST00000505676 TOMM6Q96B49 74 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 ZMAT4Q9H898 229 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 MDFICQ9P1T7 246 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 TEX15Q9BXT5 2789 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 VCYO14598 125 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 INSP01308 110 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 PRSS1P07477 247 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 COX8AP10176 69 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 ZNF415Q09FC8 603 aa12.73□□□□□ -0.37
TRAPPC11-204ENST00000505676 ZFHX3Q15911 3703 aa12.72□□□□□ -0.37
TRAPPC11-204ENST00000505676 TRAV12-1A0A0B4J245 112 aa12.72□□□□□ -0.37
TRAPPC11-204ENST00000505676 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.72□□□□□ -0.37
TRAPPC11-204ENST00000505676 FXYD7P58549 80 aa12.72□□□□□ -0.37
TRAPPC11-204ENST00000505676 SUMO4Q6EEV6 95 aa12.72□□□□□ -0.37
TRAPPC11-204ENST00000505676 H7C1H1 209 aa12.72□□□□□ -0.37
TRAPPC11-204ENST00000505676 ODF1Q14990 250 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms