RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 AP1S3Q96PC3 154 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 SDF2Q99470 211 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 PDCD10Q9BUL8 212 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 CST11Q9H112 138 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 ATG5Q9H1Y0 275 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TMEM138Q9NPI0 162 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 COMMD3Q9UBI1 195 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 SCP2D1Q9UJQ7 156 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 HSPB8Q9UJY1 196 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 PAIP2BQ9ULR5 123 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 TNFSF18Q9UNG2 199 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 IER3IP1Q9Y5U9 82 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 COL1A1P02452 1464 aaPredicted RBP0.53□□□□□ -2.33
VPS50-219ENST00000495039 MRC1P22897 1456 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 PXDNQ92626 1479 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 KCPQ6ZWJ8 1503 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 DIP2AQ14689 1571 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 CFAP74Q9C0B2 1584 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 DIP2BQ9P265 1576 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 DIP2CQ9Y2E4 1556 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 PIK3C2BO00750 1634 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 DEPDC5O75140 1603 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 ABCA9Q8IUA7 1624 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 KIF21AQ7Z4S6 1674 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 CFAP43Q8NDM7 1665 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 ITSN2Q9NZM3 1697 aa0.53□□□□□ -2.33
VPS50-219ENST00000495039 DOCK3Q8IZD9 2030 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TRAV36DV7A0A075B6V5 113 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 A0A087WSZ3 146 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 PIGBOS1A0A0B4J2F0 54 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TRBV7-6A0A0J9YX20 115 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 LOC107986453A0A1B0GWG9 222 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TRBV6-4A0A1B0GX49 114 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TCRBV3S1A0A5B6 114 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 NAP1L6A6NFF2 107 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 MCRIP1C9JLW8 97 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 H3BSH0 61 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 M0R129 80 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 HMGN4O00479 90 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 NUPR1O60356 82 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 SULT1C4O75897 302 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 DPM2O94777 84 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 SAA1P0DJI8 122 aaPredicted RBP0.52□□□□□ -2.33
VPS50-219ENST00000495039 CCL4P13236 92 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 RPL7P18124 248 aaKnown RBP0.52□□□□□ -2.33
VPS50-219ENST00000495039 ETV6P41212 452 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 GNG2P59768 71 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 ARPC4P59998 168 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 PCBD1P61457 104 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 PPP3R1P63098 170 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 SMCO1Q147U7 214 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 DEFB110Q30KQ9 67 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 DEFB109BQ30KR1 87 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 HSD17B12Q53GQ0 312 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 HRCT1Q6UXD1 115 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 CASC2Q6XLA1 102 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 ZNF833PQ6ZTB9 187 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 COMMD6Q7Z4G1 85 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 SBSPONQ8IVN8 264 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TEX29Q8N6K0 151 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 ACBD7Q8N6N7 88 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 DEFB124Q8NES8 71 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 OR51A4Q8NGJ6 313 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 PATE1Q8WXA2 126 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 SPTSSAQ969W0 71 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 COX14Q96I36 57 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 CARD19Q96LW7 228 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 LINC00052Q96N35 136 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 GGACTQ9BVM4 153 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 FAIMQ9NVQ4 179 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TAS2R8Q9NYW2 309 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 GSKIPQ9P0R6 139 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 ABRACLQ9P1F3 81 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 GNG8Q9UK08 70 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 BOKQ9UMX3 212 aaPredicted RBP0.52□□□□□ -2.33
VPS50-219ENST00000495039 CHCHD2Q9Y6H1 151 aaPredicted RBP0.52□□□□□ -2.33
VPS50-219ENST00000495039 UNC13BO14795 1591 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 NWD1Q149M9 1564 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 FRMPD1Q5SYB0 1578 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TMEM131LA2VDJ0 1609 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 CLTCL1P53675 1640 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 TRPM1Q7Z4N2 1603 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 IQGAP3Q86VI3 1631 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 MROH1Q8NDA8 1641 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 CROCC2H7BZ55 1655 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 KDM5AP29375 1690 aaKnown RBP0.52□□□□□ -2.33
VPS50-219ENST00000495039 ARHGEF28Q8N1W1 1705 aaKnown RBP0.52□□□□□ -2.33
VPS50-219ENST00000495039 MED12Q93074 2177 aa0.52□□□□□ -2.33
VPS50-219ENST00000495039 MUC5ACP98088 5654 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 TRAV17A0A0B4J275 112 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 LOC107984640A0A0U1RRK4 108 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 C3orf85A0A1B0GTC6 90 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 SPAARA0A1B0GVQ0 90 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 A0A1B0GWA3 101 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 A0A1B0GX51 115 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 KANTRA0A1W2PQU2 76 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 TMEM189A5PLL7 270 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 A6NIN4 97 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 H7BYZ3 331 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 UQCRQO14949 82 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms