RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SSBP4Q9BWG4 385 aaPredicted RBP9.96□□□□□ -0.82
C9orf3-221ENST00000489562 SCRT2Q9NQ03 307 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 U3KQK5 164 aa9.96□□□□□ -0.82
C9orf3-221ENST00000489562 C7orf77A4D0Y5 90 aa9.95□□□□□ -0.82
C9orf3-221ENST00000489562 SPART-AS1P0CW21 52 aa9.95□□□□□ -0.82
C9orf3-221ENST00000489562 GZMBP10144 247 aa9.95□□□□□ -0.82
C9orf3-221ENST00000489562 EMP1P54849 157 aa9.95□□□□□ -0.82
C9orf3-221ENST00000489562 FOXA3P55318 350 aaPredicted RBP9.95□□□□□ -0.82
C9orf3-221ENST00000489562 PIK3CD-AS1Q5SR53 167 aa9.95□□□□□ -0.82
C9orf3-221ENST00000489562 NOP10Q9NPE3 64 aaKnown RBP9.95□□□□□ -0.82
C9orf3-221ENST00000489562 TMEM242Q9NWH2 141 aa9.95□□□□□ -0.82
C9orf3-221ENST00000489562 PHLDA3Q9Y5J5 127 aa9.95□□□□□ -0.82
C9orf3-221ENST00000489562 A0A0J9YWU9 116 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 DEFB4AO15263 64 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 SPINK4O60575 86 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 CTRLP40313 264 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 CACNG7P62955 275 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 WDR73Q6P4I2 378 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 ZFP82Q8N141 532 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 SYT8Q8NBV8 401 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 DKK2Q9UBU2 259 aa9.94□□□□□ -0.82
C9orf3-221ENST00000489562 SMIM27A0A1W2PRY6 76 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 HIGD1CA8MV81 97 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 FAM222AQ5U5X8 452 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 GTSF1Q8WW33 167 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 RASL10AQ92737 203 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 BORCS7Q96B45 105 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 IMMP2LQ96T52 175 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 TPPP3Q9BW30 176 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 RPS10P5Q9NQ39 176 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 NAT8BQ9UHF3 227 aa9.93□□□□□ -0.82
C9orf3-221ENST00000489562 TRGV1A0A0A0MS02 117 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 CXorf65A6NEN9 183 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 NXPH4O95158 308 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 ZNF876PQ49A33 203 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 SPANXN1Q5VSR9 72 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 LYZL1Q6UWQ5 148 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 LINC00612Q8N6U2 182 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 CNFNQ9BYD5 112 aa9.92□□□□□ -0.82
C9orf3-221ENST00000489562 IGHV4-4A0A075B6R2 117 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 S100A1P23297 94 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 KCNIP4Q6PIL6 250 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 Q6ZTI0 123 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 OR10AG1Q8NH19 301 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 C18orf15Q96N68 181 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 MRPL16Q9NX20 251 aaKnown RBP9.91□□□□□ -0.82
C9orf3-221ENST00000489562 COL7A1Q02388 2944 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 NACAE9PAV3 2078 aa9.91□□□□□ -0.82
C9orf3-221ENST00000489562 A0A1B0GUT8 65 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 M0R381 172 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 ATP6V1G1O75348 118 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 S100PP25815 95 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 DAD1P61803 113 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 NUP35Q8NFH5 326 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 C11orf45Q8TAV5 145 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 PGLYRP4Q96LB8 373 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 CELA1Q9UNI1 258 aa9.9□□□□□ -0.82
C9orf3-221ENST00000489562 TRGV2A0A075B6R0 118 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 TRAV9-1A0A075B6T8 112 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 GAGE12BA1L429 117 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 A8MWV9 139 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 GAGE7O76087 117 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 GAGE12FP0CL80 117 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 GAGE12GP0CL81 117 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 GAGE12IP0CL82 117 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 DEFB130BP0DP73 79 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 DEFB130AP0DP74 79 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 DMRTA1Q5VZB9 504 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 EDA2RQ9HAV5 297 aa9.89□□□□□ -0.83
C9orf3-221ENST00000489562 PRKDCP78527 4128 aaKnown RBP9.88□□□□□ -0.83
C9orf3-221ENST00000489562 A0A1B0GW15 77 aa9.88□□□□□ -0.83
C9orf3-221ENST00000489562 CIDEAO60543 219 aa9.88□□□□□ -0.83
C9orf3-221ENST00000489562 TRGC1P0CF51 173 aa9.88□□□□□ -0.83
C9orf3-221ENST00000489562 NTF3P20783 257 aa9.88□□□□□ -0.83
C9orf3-221ENST00000489562 RIGQ13278 110 aa9.88□□□□□ -0.83
C9orf3-221ENST00000489562 AP1S3Q96PC3 154 aa9.88□□□□□ -0.83
C9orf3-221ENST00000489562 STAB2Q8WWQ8 2551 aa9.88□□□□□ -0.83
C9orf3-221ENST00000489562 TRAV4A0A0B4J268 109 aa9.87□□□□□ -0.83
C9orf3-221ENST00000489562 RHODO00212 210 aa9.87□□□□□ -0.83
C9orf3-221ENST00000489562 S100A8P05109 93 aa9.87□□□□□ -0.83
C9orf3-221ENST00000489562 C12orf74Q32Q52 190 aa9.87□□□□□ -0.83
C9orf3-221ENST00000489562 ATP5L2Q7Z4Y8 100 aa9.87□□□□□ -0.83
C9orf3-221ENST00000489562 BTF3L4Q96K17 158 aa9.87□□□□□ -0.83
C9orf3-221ENST00000489562 MUC21A0A0G2JKD1 596 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 MUC21A0A140T8X8 626 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 RS1O15537 224 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 ATP5G1P05496 136 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 FAM3BP58499 235 aaPredicted RBP9.86□□□□□ -0.83
C9orf3-221ENST00000489562 TWIST1Q15672 202 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 SMIM15Q7Z3B0 74 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 OR4C5Q8NGB2 326 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 DNAH9Q9NYC9 4486 aa9.86□□□□□ -0.83
C9orf3-221ENST00000489562 SMIM17P0DL12 118 aa9.85□□□□□ -0.83
C9orf3-221ENST00000489562 CFAP126Q5VTH2 177 aa9.85□□□□□ -0.83
C9orf3-221ENST00000489562 ATRAIDQ6UW56 229 aa9.85□□□□□ -0.83
C9orf3-221ENST00000489562 ZFP2Q6ZN57 461 aa9.85□□□□□ -0.83
C9orf3-221ENST00000489562 NANOS2P60321 138 aaKnown RBP9.84□□□□□ -0.83
C9orf3-221ENST00000489562 SSTP61278 116 aa9.84□□□□□ -0.83
C9orf3-221ENST00000489562 HBBP68871 147 aa9.84□□□□□ -0.83
C9orf3-221ENST00000489562 RASL11AQ6T310 242 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms