RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GIPP09681 153 aaPredicted RBP9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 ARL14EPLP0DKL9 152 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 RHOHQ15669 191 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 ZNF506Q5JVG8 444 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 LELP1Q5T871 98 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 Q6ZSA8 131 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 SCGB1C1Q8TD33 95 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 DNAJC30Q96LL9 226 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 TM2D2Q9BX73 214 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 BOLA1Q9Y3E2 137 aa9.15□□□□□ -0.94
SQSTM1-208ENST00000485412 TRBV6-4A0A1B0GX49 114 aa9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 IGLV2-11P01706 119 aa9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 PFN1P07737 140 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 RNASE3P12724 160 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 CYCSP99999 105 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 ZFP69Q49AA0 526 aa9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 PQLC2Q6ZP29 291 aa9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 KCNS1Q96KK3 526 aa9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 PRADC1Q9BSG0 188 aa9.14□□□□□ -0.95
SQSTM1-208ENST00000485412 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 GCGP01275 180 aa9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 LINC00694P0DN24 101 aa9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 ACOT6Q3I5F7 207 aaPredicted RBP9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 FAM74A1Q5RGS3 127 aa9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 DAZ4Q86SG3 579 aaKnown RBP9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 ATP6V0E2Q8NHE4 81 aa9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 GTSF1LQ9H1H1 148 aa9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 DAZ3Q9NR90 486 aaKnown RBP9.13□□□□□ -0.95
SQSTM1-208ENST00000485412 A0A1W2PPV4 95 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 GGTLC3B5MD39 225 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 OXTP01178 125 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 TCRAP04437 139 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 OR10G9Q8NGN4 311 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 OR10G7Q8NGN6 311 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 JPT2Q9H910 190 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 PSG8Q9UQ74 426 aa9.12□□□□□ -0.95
SQSTM1-208ENST00000485412 GAGE12JA6NER3 117 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 GAGE1Q13065 139 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 GAGE4Q13068 117 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 GAGE5Q13069 117 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 LAGE3Q14657 143 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 GAGE13Q4V321 117 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 SCXQ7RTU7 201 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 PRNTQ86SH4 94 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 ARL6IP6Q8N6S5 226 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 SAMD10Q9BYL1 202 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 PARLQ9H300 379 aa9.11□□□□□ -0.95
SQSTM1-208ENST00000485412 IGKV3D-20A0A0C4DH25 116 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 G3V3Q6 166 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 STAG3L2P0CL84 134 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 STAG3L3P0CL85 134 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 GCHFRP30047 84 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 CDC34P49427 236 aaPredicted RBP9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 NDUFA5Q16718 116 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 SLC7A5P1Q8MH63 180 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 C14orf178Q8N769 122 aaPredicted RBP9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 C5orf17Q8NAS9 161 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 OR2T35Q8NGX2 323 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 BAALCQ8WXS3 180 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 LINC00479Q96M42 142 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 NDFIP1Q9BT67 221 aa9.1□□□□□ -0.95
SQSTM1-208ENST00000485412 TAAR5O14804 337 aa9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 PET100P0DJ07 73 aa9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 MGST1P10620 155 aaKnown RBP9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 KRTAP10-4P60372 401 aaPredicted RBP9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 FLI1Q01543 452 aaPredicted RBP9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 Q5BKY6 102 aa9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 UFSP1Q6NVU6 142 aa9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 HSD17B11Q8NBQ5 300 aa9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 SUN5Q8TC36 379 aa9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 RAB24Q969Q5 203 aa9.09□□□□□ -0.95
SQSTM1-208ENST00000485412 TRAV34A0A0B4J273 112 aa9.08□□□□□ -0.96
SQSTM1-208ENST00000485412 HMSDA8MTL9 139 aa9.08□□□□□ -0.96
SQSTM1-208ENST00000485412 SUMO1P63165 101 aaKnown RBP9.08□□□□□ -0.96
SQSTM1-208ENST00000485412 SMUG1Q53HV7 270 aa9.08□□□□□ -0.96
SQSTM1-208ENST00000485412 PTH2Q96A98 100 aa9.08□□□□□ -0.96
SQSTM1-208ENST00000485412 SH3BGRL3Q9H299 93 aa9.08□□□□□ -0.96
SQSTM1-208ENST00000485412 EPDR1Q9UM22 224 aa9.08□□□□□ -0.96
SQSTM1-208ENST00000485412 TRAV8-3A0A0A6YYJ7 113 aa9.07□□□□□ -0.96
SQSTM1-208ENST00000485412 RBFOX3A6NFN3 312 aa9.07□□□□□ -0.96
SQSTM1-208ENST00000485412 SMLR1H3BR10 107 aa9.07□□□□□ -0.96
SQSTM1-208ENST00000485412 CIDEAO60543 219 aa9.07□□□□□ -0.96
SQSTM1-208ENST00000485412 OR11H4Q8NGC9 324 aa9.07□□□□□ -0.96
SQSTM1-208ENST00000485412 SERTM2A0A1B0GWG4 89 aa9.06□□□□□ -0.96
SQSTM1-208ENST00000485412 ATP6V0CP27449 155 aa9.06□□□□□ -0.96
SQSTM1-208ENST00000485412 LGALSLQ3ZCW2 172 aaPredicted RBP9.06□□□□□ -0.96
SQSTM1-208ENST00000485412 CYB561D1Q8N8Q1 229 aa9.06□□□□□ -0.96
SQSTM1-208ENST00000485412 OR2G3Q8NGZ4 309 aa9.06□□□□□ -0.96
SQSTM1-208ENST00000485412 CHAC1Q9BUX1 264 aa9.06□□□□□ -0.96
SQSTM1-208ENST00000485412 H3BVH4 76 aa9.05□□□□□ -0.96
SQSTM1-208ENST00000485412 S100A1P23297 94 aa9.05□□□□□ -0.96
SQSTM1-208ENST00000485412 TOR2AQ5JU69 321 aa9.05□□□□□ -0.96
SQSTM1-208ENST00000485412 DMRTA1Q5VZB9 504 aa9.05□□□□□ -0.96
SQSTM1-208ENST00000485412 ZFP2Q6ZN57 461 aa9.05□□□□□ -0.96
SQSTM1-208ENST00000485412 C9orf62Q8N4C0 152 aa9.05□□□□□ -0.96
SQSTM1-208ENST00000485412 ARL2-SNX15V9GYD0 113 aa9.05□□□□□ -0.96
SQSTM1-208ENST00000485412 A8MWV9 139 aa9.04□□□□□ -0.96
SQSTM1-208ENST00000485412 CRIP1P50238 77 aa9.04□□□□□ -0.96
SQSTM1-208ENST00000485412 ZNF726P1Q15940 193 aa9.04□□□□□ -0.96
SQSTM1-208ENST00000485412 NIT1Q86X76 327 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms