RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 EVI2AP22794 236 aa13.34□□□□□ -0.27
SMC4-211ENST00000469858 SPATA3Q8NHX4 192 aa13.34□□□□□ -0.27
SMC4-211ENST00000469858 MUC4Q99102 2169 aa13.34□□□□□ -0.27
SMC4-211ENST00000469858 TENM1Q9UKZ4 2725 aa13.34□□□□□ -0.27
SMC4-211ENST00000469858 BEAN1Q3B7T3 259 aa13.34□□□□□ -0.27
SMC4-211ENST00000469858 SMIM15Q7Z3B0 74 aa13.34□□□□□ -0.27
SMC4-211ENST00000469858 Q8N1Y9 231 aa13.34□□□□□ -0.27
SMC4-211ENST00000469858 TEP1Q99973 2627 aaKnown RBP13.33□□□□□ -0.28
SMC4-211ENST00000469858 CMC4P56277 68 aaPredicted RBP13.33□□□□□ -0.28
SMC4-211ENST00000469858 KRTAP24-1Q3LI83 254 aa13.33□□□□□ -0.28
SMC4-211ENST00000469858 DMRTA1Q5VZB9 504 aa13.33□□□□□ -0.28
SMC4-211ENST00000469858 RNF185Q96GF1 192 aa13.33□□□□□ -0.28
SMC4-211ENST00000469858 WFDC10AQ9H1F0 79 aa13.33□□□□□ -0.28
SMC4-211ENST00000469858 ATRQ13535 2644 aa13.33□□□□□ -0.28
SMC4-211ENST00000469858 RAB4AP20338 218 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 RNASEKQ6P5S7 137 aaKnown RBP13.32□□□□□ -0.28
SMC4-211ENST00000469858 LINC00518Q8N0U6 118 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 ORMDL3Q8N138 153 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 SAMD10Q9BYL1 202 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 IGHV3-16A0A0C4DH30 117 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 SMKR1H3BMG3 65 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 CKS2P33552 79 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 TRPT1Q86TN4 253 aaKnown RBP13.32□□□□□ -0.28
SMC4-211ENST00000469858 CLUHP3Q96NS8 147 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 MDFICQ9P1T7 246 aa13.32□□□□□ -0.28
SMC4-211ENST00000469858 NCR2O95944 276 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 HTN1P15515 57 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 PRELID3AQ96N28 172 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 U3KQK5 164 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 CBY3A6NI87 242 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 PMCHP20382 165 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 NIT1Q86X76 327 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 FAM110AQ9BQ89 295 aa13.31□□□□□ -0.28
SMC4-211ENST00000469858 INSP01308 110 aa13.3□□□□□ -0.28
SMC4-211ENST00000469858 SMIM6P0DI80 62 aa13.3□□□□□ -0.28
SMC4-211ENST00000469858 C9orf66Q5T8R8 295 aa13.3□□□□□ -0.28
SMC4-211ENST00000469858 URB1-AS1Q96HZ7 61 aa13.3□□□□□ -0.28
SMC4-211ENST00000469858 C12orf57Q99622 126 aa13.3□□□□□ -0.28
SMC4-211ENST00000469858 C19orf73Q9NVV2 129 aa13.3□□□□□ -0.28
SMC4-211ENST00000469858 XCL2Q9UBD3 114 aa13.3□□□□□ -0.28
SMC4-211ENST00000469858 TRGV11A0A075B6L2 103 aa13.29□□□□□ -0.28
SMC4-211ENST00000469858 AMTP48728 403 aa13.29□□□□□ -0.28
SMC4-211ENST00000469858 C9orf85Q96MD7 179 aa13.29□□□□□ -0.28
SMC4-211ENST00000469858 HSBP1O75506 76 aa13.29□□□□□ -0.28
SMC4-211ENST00000469858 INSL3P51460 131 aa13.29□□□□□ -0.28
SMC4-211ENST00000469858 FAM19A2Q8N3H0 131 aa13.29□□□□□ -0.28
SMC4-211ENST00000469858 NXPH4O95158 308 aa13.28□□□□□ -0.28
SMC4-211ENST00000469858 PYY3Q5JQD4 70 aa13.28□□□□□ -0.28
SMC4-211ENST00000469858 C14orf178Q8N769 122 aaPredicted RBP13.28□□□□□ -0.28
SMC4-211ENST00000469858 AP1S3Q96PC3 154 aa13.28□□□□□ -0.28
SMC4-211ENST00000469858 GAS8-AS1O95177 125 aa13.27□□□□□ -0.28
SMC4-211ENST00000469858 NPYP01303 97 aa13.27□□□□□ -0.28
SMC4-211ENST00000469858 PPBPP02775 128 aa13.27□□□□□ -0.28
SMC4-211ENST00000469858 NUTF2P61970 127 aaKnown RBP13.27□□□□□ -0.28
SMC4-211ENST00000469858 LOC389332A0A1B0GUA5 103 aa13.27□□□□□ -0.29
SMC4-211ENST00000469858 PRM2P04554 102 aa13.27□□□□□ -0.29
SMC4-211ENST00000469858 LINC00614P0C842 121 aa13.27□□□□□ -0.29
SMC4-211ENST00000469858 LINC01587Q99440 93 aa13.27□□□□□ -0.29
SMC4-211ENST00000469858 DPH3P1Q9H4G8 78 aa13.27□□□□□ -0.29
SMC4-211ENST00000469858 TRAV26-2A0A0B4J265 109 aa13.26□□□□□ -0.29
SMC4-211ENST00000469858 C20orf144Q9BQM9 153 aa13.26□□□□□ -0.29
SMC4-211ENST00000469858 VWFP04275 2813 aa13.26□□□□□ -0.29
SMC4-211ENST00000469858 RPL35AP18077 110 aaKnown RBP13.25□□□□□ -0.29
SMC4-211ENST00000469858 PRIMA1Q86XR5 153 aa13.25□□□□□ -0.29
SMC4-211ENST00000469858 PRSS3P2Q8NHM4 247 aa13.25□□□□□ -0.29
SMC4-211ENST00000469858 CHCHD1Q96BP2 118 aaKnown RBP13.25□□□□□ -0.29
SMC4-211ENST00000469858 GATA1P15976 413 aaPredicted RBP13.25□□□□□ -0.29
SMC4-211ENST00000469858 TMEM208Q9BTX3 173 aa13.25□□□□□ -0.29
SMC4-211ENST00000469858 MGPP08493 103 aa13.24□□□□□ -0.29
SMC4-211ENST00000469858 IFI27P40305 119 aaPredicted RBP13.24□□□□□ -0.29
SMC4-211ENST00000469858 PMCHL1Q16048 86 aa13.24□□□□□ -0.29
SMC4-211ENST00000469858 Q6ZWC4 215 aa13.24□□□□□ -0.29
SMC4-211ENST00000469858 GTSCR1Q86UQ5 136 aa13.24□□□□□ -0.29
SMC4-211ENST00000469858 SYT8Q8NBV8 401 aa13.24□□□□□ -0.29
SMC4-211ENST00000469858 JPT2Q9H910 190 aa13.24□□□□□ -0.29
SMC4-211ENST00000469858 NOTCH3Q9UM47 2321 aa13.24□□□□□ -0.29
SMC4-211ENST00000469858 IGHV3OR16-12A0A075B7B8 117 aa13.23□□□□□ -0.29
SMC4-211ENST00000469858 TNFRSF6BO95407 300 aa13.23□□□□□ -0.29
SMC4-211ENST00000469858 FA2HQ7L5A8 372 aa13.23□□□□□ -0.29
SMC4-211ENST00000469858 DEFB125Q8N687 156 aa13.23□□□□□ -0.29
SMC4-211ENST00000469858 SMIM17P0DL12 118 aa13.23□□□□□ -0.29
SMC4-211ENST00000469858 LAMTOR2Q9Y2Q5 125 aa13.23□□□□□ -0.29
SMC4-211ENST00000469858 C1orf158Q8N1D5 194 aa13.22□□□□□ -0.29
SMC4-211ENST00000469858 MRAP2Q96G30 205 aa13.22□□□□□ -0.29
SMC4-211ENST00000469858 MCRIP2Q9BUT9 160 aaKnown RBP13.22□□□□□ -0.29
SMC4-211ENST00000469858 ZNF747Q9BV97 191 aa13.22□□□□□ -0.29
SMC4-211ENST00000469858 MAP1LC3AQ9H492 121 aa13.22□□□□□ -0.29
SMC4-211ENST00000469858 AP5S1Q9NUS5 200 aa13.22□□□□□ -0.29
SMC4-211ENST00000469858 A0A087WWL8 130 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 IGHV1-24A0A0C4DH33 117 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 ZNF415Q09FC8 603 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 JOSD1Q15040 202 aaPredicted RBP13.21□□□□□ -0.29
SMC4-211ENST00000469858 ZNF876PQ49A33 203 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 CDPF1Q6NVV7 123 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 LINC00467Q9BRT7 94 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 IGLL1P15814 213 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 C3orf56Q8N813 242 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 KIF25-AS1Q9Y6Z4 181 aa13.21□□□□□ -0.29
SMC4-211ENST00000469858 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
SMC4-211ENST00000469858 NRACQ8N912 160 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms