RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 C9JQL5 133 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 H3BVH4 76 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 IGHV3-53P01767 116 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 ARMS2P0C7Q2 107 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 HOXA5P20719 270 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 SRSF3P84103 164 aaKnown RBP8.4□□□□□ -1.06
VPS13D-204ENST00000469054 ZNF876PQ49A33 203 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 CLLU1Q5K131 121 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 TMEM88Q6PEY1 159 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 PTH2Q96A98 100 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 IL36BQ9NZH7 164 aa8.4□□□□□ -1.06
VPS13D-204ENST00000469054 TRAV4A0A0B4J268 109 aa8.39□□□□□ -1.07
VPS13D-204ENST00000469054 C19orf71A6NCJ1 209 aa8.39□□□□□ -1.07
VPS13D-204ENST00000469054 ZNF727A8MUV8 499 aa8.39□□□□□ -1.07
VPS13D-204ENST00000469054 CXCL1P09341 107 aa8.39□□□□□ -1.07
VPS13D-204ENST00000469054 POM121L12Q8N7R1 296 aa8.39□□□□□ -1.07
VPS13D-204ENST00000469054 SMIM7Q9BQ49 75 aa8.39□□□□□ -1.07
VPS13D-204ENST00000469054 LY96Q9Y6Y9 160 aa8.39□□□□□ -1.07
VPS13D-204ENST00000469054 K7EN84 100 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 P01737 135 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 SFTA3P0C7M3 94 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 MED14OSP0DP75 135 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 LORP23490 312 aaPredicted RBP8.38□□□□□ -1.07
VPS13D-204ENST00000469054 PIK3CD-AS1Q5SR53 167 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 OR4C5Q8NGB2 326 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 OR2D3Q8NGH3 330 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 ZNF479Q96JC4 524 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 SCRT2Q9NQ03 307 aa8.38□□□□□ -1.07
VPS13D-204ENST00000469054 SACSQ9NZJ4 4579 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 TRAV26-1A0A087WT03 109 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 RS1O15537 224 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 RPS20P60866 119 aaKnown RBP8.37□□□□□ -1.07
VPS13D-204ENST00000469054 SLAQ13239 276 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 FHL2Q14192 279 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 FAM74A3Q4VXF1 159 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 C15orf53Q8NAA6 179 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 NUDT10Q8NFP7 164 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 NUDT11Q96G61 164 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 SSBP4Q9BWG4 385 aaPredicted RBP8.37□□□□□ -1.07
VPS13D-204ENST00000469054 PHLDA3Q9Y5J5 127 aa8.37□□□□□ -1.07
VPS13D-204ENST00000469054 TRGV4A0A0C4DH28 118 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 A0A0J9YY99 117 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 LCE6AA0A183 80 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 XKRY2A2RUG3 117 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 H3BNG1 76 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 SNAI2O43623 268 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 CIDEAO60543 219 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 CFAP126Q5VTH2 177 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 LGALS9CQ6DKI2 356 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 LINC01551Q86U37 167 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 SYT8Q8NBV8 401 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 LINC00476Q8WZB0 136 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 VSIG2Q96IQ7 327 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 RNASE7Q9H1E1 156 aaKnown RBP8.36□□□□□ -1.07
VPS13D-204ENST00000469054 PRO0255Q9UI72 69 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 HHLA3Q9XRX5 114 aa8.36□□□□□ -1.07
VPS13D-204ENST00000469054 KMT2CQ8NEZ4 4911 aaKnown RBP8.35□□□□□ -1.07
VPS13D-204ENST00000469054 A8MWV9 139 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 NUDT3O95989 172 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 OR5AL1P0C617 328 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 CRYBA4P53673 196 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 TMEM241Q24JQ0 296 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 SOHLH1Q5JUK2 328 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 FAM231DQ6ZW35 169 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 ZFP82Q8N141 532 aa8.35□□□□□ -1.07
VPS13D-204ENST00000469054 M0R381 172 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 PAX4O43316 350 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 LY6G6CO95867 125 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 IGLC6P0CF74 106 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 GZMBP10144 247 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 ERVFC1-1P60608 527 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 FER1L6-AS1Q8NA97 138 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 RPP21Q9H633 154 aaKnown RBP8.34□□□□□ -1.07
VPS13D-204ENST00000469054 JPT2Q9H910 190 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 NAT8Q9UHE5 227 aa8.34□□□□□ -1.07
VPS13D-204ENST00000469054 DNAH1Q9P2D7 4330 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 IGHV3-73A0A0B4J1V6 119 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 A0A1W2PPQ1 181 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 GATCO43716 136 aaKnown RBP8.33□□□□□ -1.08
VPS13D-204ENST00000469054 NXPH4O95158 308 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 P0DMU3 169 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 FAM231AP0DMU4 169 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 FAM231CP0DMU5 169 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 GATA1P15976 413 aaPredicted RBP8.33□□□□□ -1.08
VPS13D-204ENST00000469054 RPL23P62829 140 aaKnown RBP8.33□□□□□ -1.08
VPS13D-204ENST00000469054 SPANXN1Q5VSR9 72 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 ZFP2Q6ZN57 461 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 OR10AG1Q8NH19 301 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 SAMD10Q9BYL1 202 aa8.33□□□□□ -1.08
VPS13D-204ENST00000469054 ALMS1Q8TCU4 4167 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 MUC4Q99102 2169 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 MUC21A0A0G2JKD1 596 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 MUC21A0A140T8X8 626 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 F2Z2F3 143 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 UFSP1Q6NVU6 142 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 ISOC2Q96AB3 205 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 SFRP2Q96HF1 295 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 TPPP3Q9BW30 176 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 OSTCQ9NRP0 149 aa8.32□□□□□ -1.08
VPS13D-204ENST00000469054 A0A096LPF7 62 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms