RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 C9JCJ5 164 aa13.9□□□□□ -0.18
COL9A3-202ENST00000452372 VSIG2Q96IQ7 327 aa13.9□□□□□ -0.18
COL9A3-202ENST00000452372 IL36BQ9NZH7 164 aa13.9□□□□□ -0.18
COL9A3-202ENST00000452372 NACAE9PAV3 2078 aa13.9□□□□□ -0.18
COL9A3-202ENST00000452372 RAB19A4D1S5 217 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 RBFOX3A6NFN3 312 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 SFTA3P0C7M3 94 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 CENPWQ5EE01 88 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 TEX261Q6UWH6 196 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 OR4C5Q8NGB2 326 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 KRTAP17-1Q9BYP8 105 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 PRO0255Q9UI72 69 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 HHLA3Q9XRX5 114 aa13.89□□□□□ -0.19
COL9A3-202ENST00000452372 PGPEP1LA6NFU8 196 aa13.88□□□□□ -0.19
COL9A3-202ENST00000452372 IGLV2-8P01709 118 aa13.88□□□□□ -0.19
COL9A3-202ENST00000452372 UBE2DNLQ8IWF7 75 aa13.88□□□□□ -0.19
COL9A3-202ENST00000452372 SMIM12Q96EX1 92 aa13.88□□□□□ -0.19
COL9A3-202ENST00000452372 KIAA1109Q2LD37 5005 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 TMSB15BA0A087X1C1 80 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 TRGV4A0A0C4DH28 118 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 GRIFINA4D1Z8 144 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 PAX4O43316 350 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 GNG4P50150 75 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 CRYBA4P53673 196 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 ZNF506Q5JVG8 444 aa13.87□□□□□ -0.19
COL9A3-202ENST00000452372 H3BVH4 76 aa13.86□□□□□ -0.19
COL9A3-202ENST00000452372 RS1O15537 224 aa13.86□□□□□ -0.19
COL9A3-202ENST00000452372 ARMS2P0C7Q2 107 aa13.86□□□□□ -0.19
COL9A3-202ENST00000452372 PIK3CD-AS1Q5SR53 167 aa13.86□□□□□ -0.19
COL9A3-202ENST00000452372 PRR27Q6MZM9 219 aa13.86□□□□□ -0.19
COL9A3-202ENST00000452372 TRBV20OR9-2A0A075B6H5 130 aa13.85□□□□□ -0.19
COL9A3-202ENST00000452372 TMEM250H0YL14 139 aa13.85□□□□□ -0.19
COL9A3-202ENST00000452372 CIDEAO60543 219 aa13.85□□□□□ -0.19
COL9A3-202ENST00000452372 CCL18P55774 89 aa13.85□□□□□ -0.19
COL9A3-202ENST00000452372 CFAP126Q5VTH2 177 aa13.85□□□□□ -0.19
COL9A3-202ENST00000452372 SCRT2Q9NQ03 307 aa13.85□□□□□ -0.19
COL9A3-202ENST00000452372 PKHD1P08F94 4074 aa13.84□□□□□ -0.19
COL9A3-202ENST00000452372 A0A096LPF7 62 aa13.84□□□□□ -0.19
COL9A3-202ENST00000452372 CXCL1P09341 107 aa13.84□□□□□ -0.19
COL9A3-202ENST00000452372 MGST1P10620 155 aaKnown RBP13.84□□□□□ -0.19
COL9A3-202ENST00000452372 FAM3BP58499 235 aaPredicted RBP13.84□□□□□ -0.19
COL9A3-202ENST00000452372 RPL19P84098 196 aaKnown RBP13.84□□□□□ -0.19
COL9A3-202ENST00000452372 FAM210AQ96ND0 272 aa13.84□□□□□ -0.19
COL9A3-202ENST00000452372 NDUFS6O75380 124 aaKnown RBP13.83□□□□□ -0.2
COL9A3-202ENST00000452372 TOR2AQ5JU69 321 aa13.83□□□□□ -0.2
COL9A3-202ENST00000452372 EIF5A2Q9GZV4 153 aaKnown RBP13.83□□□□□ -0.2
COL9A3-202ENST00000452372 PHLDA3Q9Y5J5 127 aa13.83□□□□□ -0.2
COL9A3-202ENST00000452372 A8MWV9 139 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 MED14OSP0DP75 135 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 DMRTA1Q5VZB9 504 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 SYT8Q8NBV8 401 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 BIN3Q9NQY0 253 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 LINC00588Q9Y4M8 146 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 ICOSQ9Y6W8 199 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 PKD1P98161 4303 aa13.82□□□□□ -0.2
COL9A3-202ENST00000452372 C19orf71A6NCJ1 209 aa13.81□□□□□ -0.2
COL9A3-202ENST00000452372 GATA1P15976 413 aaPredicted RBP13.81□□□□□ -0.2
COL9A3-202ENST00000452372 ESRGQ1W209 222 aa13.81□□□□□ -0.2
COL9A3-202ENST00000452372 PCNPQ8WW12 178 aaKnown RBP13.81□□□□□ -0.2
COL9A3-202ENST00000452372 DAZAP1Q96EP5 407 aaKnown RBP13.81□□□□□ -0.2
COL9A3-202ENST00000452372 PARLQ9H300 379 aa13.81□□□□□ -0.2
COL9A3-202ENST00000452372 MRPL23Q16540 153 aaKnown RBP13.8□□□□□ -0.2
COL9A3-202ENST00000452372 DYNC1H1Q14204 4646 aaKnown RBP13.79□□□□□ -0.2
COL9A3-202ENST00000452372 ZFP2Q6ZN57 461 aa13.79□□□□□ -0.2
COL9A3-202ENST00000452372 OCC1Q8TAD7 63 aa13.79□□□□□ -0.2
COL9A3-202ENST00000452372 SSBP4Q9BWG4 385 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-202ENST00000452372 K7EQD1 137 aa13.78□□□□□ -0.2
COL9A3-202ENST00000452372 GYPEP15421 78 aa13.78□□□□□ -0.2
COL9A3-202ENST00000452372 ZFP82Q8N141 532 aa13.78□□□□□ -0.2
COL9A3-202ENST00000452372 ZNRF2Q8NHG8 242 aa13.78□□□□□ -0.2
COL9A3-202ENST00000452372 JPT2Q9H910 190 aa13.78□□□□□ -0.2
COL9A3-202ENST00000452372 IGHV3-73A0A0B4J1V6 119 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 TRBV6-4A0A1B0GX49 114 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 M0R381 172 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 SNAI2O43623 268 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 P01737 135 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 OR5AL1P0C617 328 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 RPS20P60866 119 aaKnown RBP13.77□□□□□ -0.21
COL9A3-202ENST00000452372 UFSP1Q6NVU6 142 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 SLC25A29Q8N8R3 303 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 OR2D3Q8NGH3 330 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 SFRP2Q96HF1 295 aa13.77□□□□□ -0.21
COL9A3-202ENST00000452372 DNAH11Q96DT5 4516 aa13.76□□□□□ -0.21
COL9A3-202ENST00000452372 A0A1B0GVY2 172 aa13.76□□□□□ -0.21
COL9A3-202ENST00000452372 SRP19P09132 144 aaKnown RBP13.76□□□□□ -0.21
COL9A3-202ENST00000452372 CEBPGP53567 150 aa13.76□□□□□ -0.21
COL9A3-202ENST00000452372 NEGR1Q7Z3B1 354 aa13.76□□□□□ -0.21
COL9A3-202ENST00000452372 NUDT10Q8NFP7 164 aa13.76□□□□□ -0.21
COL9A3-202ENST00000452372 NUDT11Q96G61 164 aa13.76□□□□□ -0.21
COL9A3-202ENST00000452372 SAMD10Q9BYL1 202 aa13.76□□□□□ -0.21
COL9A3-202ENST00000452372 PCLOQ9Y6V0 5065 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 IGLV2-18A0A075B6J9 118 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 K7EN84 100 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 NXPH4O95158 308 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 SRIP30626 198 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 RHOHQ15669 191 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 OR10AG1Q8NH19 301 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 UPK3BQ9BT76 320 aa13.75□□□□□ -0.21
COL9A3-202ENST00000452372 MRPS16Q9Y3D3 137 aaKnown RBP13.75□□□□□ -0.21
COL9A3-202ENST00000452372 LOC100131303A0A0U1RQF7 123 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms