RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 GAGE12FP0CL80 117 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 GAGE12GP0CL81 117 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 GAGE12IP0CL82 117 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 EGR2P11161 476 aaPredicted RBP8.59□□□□□ -1.03
CUX1-204ENST00000393824 PPIFP30405 207 aaKnown RBP8.59□□□□□ -1.03
CUX1-204ENST00000393824 SRSF2Q01130 221 aaKnown RBP8.59□□□□□ -1.03
CUX1-204ENST00000393824 GAGE4Q13068 117 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 PPP1R27Q86WC6 154 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 ZNF575Q86XF7 245 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 TEX29Q8N6K0 151 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 WFDC11Q8NEX6 87 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 IGLV2-18A0A075B6J9 118 aa8.58□□□□□ -1.04
CUX1-204ENST00000393824 A0A087WX48 190 aa8.58□□□□□ -1.04
CUX1-204ENST00000393824 COX7A1P24310 79 aa8.58□□□□□ -1.04
CUX1-204ENST00000393824 Q8N8P6 123 aa8.58□□□□□ -1.04
CUX1-204ENST00000393824 NCBP2LA6PVI3 153 aaKnown RBP8.58□□□□□ -1.04
CUX1-204ENST00000393824 RNF223E7ERA6 249 aa8.58□□□□□ -1.04
CUX1-204ENST00000393824 MTORP42345 2549 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 FABP5P3A8MUU1 101 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 GAS8-AS1O95177 125 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 PLNP26678 52 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 PPDPFLQ8WWR9 84 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 RPEQ96AT9 228 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 PRR25Q96S07 402 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 AAMDCQ9H7C9 122 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 VPREB3Q9UKI3 123 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 PRSS29PA6NIE9 313 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 RBP4P02753 201 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 IL4P05112 153 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 ZNF491Q8N8L2 437 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 MYOZ3Q8TDC0 251 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 Q96MF0 132 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 MSRB1Q9NZV6 116 aa8.57□□□□□ -1.04
CUX1-204ENST00000393824 CR1P17927 2039 aa8.56□□□□□ -1.04
CUX1-204ENST00000393824 IGLV1-47P01700 117 aa8.56□□□□□ -1.04
CUX1-204ENST00000393824 APELAP0DMC3 54 aa8.56□□□□□ -1.04
CUX1-204ENST00000393824 TEN1Q86WV5 123 aa8.56□□□□□ -1.04
CUX1-204ENST00000393824 CARD19Q96LW7 228 aa8.56□□□□□ -1.04
CUX1-204ENST00000393824 SPANXA1Q9NS26 97 aa8.56□□□□□ -1.04
CUX1-204ENST00000393824 BEX4Q9NWD9 120 aaPredicted RBP8.56□□□□□ -1.04
CUX1-204ENST00000393824 IGHV1-3A0A0C4DH29 117 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 MYMXA0A1B0GTQ4 84 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 AVPP01185 164 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 VMO1Q7Z5L0 202 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 SIRPDQ9H106 197 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 ANK3Q12955 4377 aaKnown RBP8.55□□□□□ -1.04
CUX1-204ENST00000393824 IGHV3-72A0A0B4J1Y9 119 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 M0QXV9 152 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 PRB4P10163 310 aaPredicted RBP8.55□□□□□ -1.04
CUX1-204ENST00000393824 UBE2D3P61077 147 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 UBE2D2P62837 147 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 SBSPONQ8IVN8 264 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 GLMPQ8WWB7 406 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 RNF125Q96EQ8 232 aa8.55□□□□□ -1.04
CUX1-204ENST00000393824 HIVEP1P15822 2718 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 IGHV3OR16-10A0A075B7F0 116 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 TRAV12-1A0A0B4J245 112 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 CCDC179H3BU77 68 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 K7EIM0 57 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 PRTN3P24158 256 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 CNTFRP26992 372 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 ZNF80P51504 273 aaPredicted RBP8.54□□□□□ -1.04
CUX1-204ENST00000393824 UBE2D1P51668 147 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 C5orf47Q569G3 176 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 BUB1B-PAK6H3BSN5 160 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 LAGE3Q14657 143 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 DYNAPQ8N1N2 210 aa8.54□□□□□ -1.04
CUX1-204ENST00000393824 TMEM262E9PQX1 116 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 F8VRH5 84 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 LRRC75A-AS1Q8N1F1 130 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 PPDPFQ9H3Y8 114 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 NF1P21359 2839 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 CENPVL3A0A0U1RRI6 287 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 LINC01549A6NIU2 74 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 H7C1H1 209 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 RHODO00212 210 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 NDUFA3O95167 84 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 IGHG4P01861 327 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 GATA1P15976 413 aaPredicted RBP8.53□□□□□ -1.04
CUX1-204ENST00000393824 SRD5A1P18405 259 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 LYRM7Q5U5X0 104 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 AJUBAQ96IF1 538 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 FBXL15Q9H469 300 aa8.53□□□□□ -1.04
CUX1-204ENST00000393824 IGKV2-40A0A087WW87 121 aaPredicted RBP8.52□□□□□ -1.05
CUX1-204ENST00000393824 M0R1W7 72 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 IGKV2D-40P01614 121 aaPredicted RBP8.52□□□□□ -1.05
CUX1-204ENST00000393824 MSMBP08118 114 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 LGALS1P09382 135 aaKnown RBP8.52□□□□□ -1.05
CUX1-204ENST00000393824 ZNF688P0C7X2 276 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 SLC25A16P16260 332 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 PSMB2P49721 201 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 NDUFV3P56181 108 aaKnown RBP8.52□□□□□ -1.05
CUX1-204ENST00000393824 DSCR9P59020 149 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 ANXA2RQ3ZCQ2 193 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 ZFP2Q6ZN57 461 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 PTH2Q96A98 100 aa8.52□□□□□ -1.05
CUX1-204ENST00000393824 TRBV20-1A0A075B6N2 111 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 ODF3BA8MYP8 253 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 LY6LH3BQJ8 138 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 ORM1P02763 201 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms