RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 CRIP1P50238 77 aa11.07□□□□□ -0.64
RTF1-201ENST00000389629 Q6ZUT4 128 aa11.07□□□□□ -0.64
RTF1-201ENST00000389629 FAM110DQ8TAY7 271 aaPredicted RBP11.07□□□□□ -0.64
RTF1-201ENST00000389629 CARD19Q96LW7 228 aa11.07□□□□□ -0.64
RTF1-201ENST00000389629 RNASE13Q5GAN3 156 aaKnown RBP11.07□□□□□ -0.64
RTF1-201ENST00000389629 KNCNA6PVL3 124 aa11.07□□□□□ -0.64
RTF1-201ENST00000389629 IGLV1-47P01700 117 aa11.07□□□□□ -0.64
RTF1-201ENST00000389629 LGALS1P09382 135 aaKnown RBP11.07□□□□□ -0.64
RTF1-201ENST00000389629 BRD3OSQ6XYD6 125 aa11.06□□□□□ -0.64
RTF1-201ENST00000389629 PHLDA1Q8WV24 401 aaPredicted RBP11.06□□□□□ -0.64
RTF1-201ENST00000389629 TMEM141Q96I45 108 aa11.06□□□□□ -0.64
RTF1-201ENST00000389629 LY6G5BQ8NDX9 201 aa11.06□□□□□ -0.64
RTF1-201ENST00000389629 UFSP1Q6NVU6 142 aa11.06□□□□□ -0.64
RTF1-201ENST00000389629 ITLN2Q8WWU7 325 aaPredicted RBP11.06□□□□□ -0.64
RTF1-201ENST00000389629 HIST1H4AP62805 103 aaKnown RBP11.06□□□□□ -0.64
RTF1-201ENST00000389629 OVOL3O00110 214 aa11.05□□□□□ -0.64
RTF1-201ENST00000389629 TM2D2Q9BX73 214 aa11.05□□□□□ -0.64
RTF1-201ENST00000389629 RS1O15537 224 aa11.05□□□□□ -0.64
RTF1-201ENST00000389629 TRPT1Q86TN4 253 aaKnown RBP11.05□□□□□ -0.64
RTF1-201ENST00000389629 MOB4Q9Y3A3 225 aa11.05□□□□□ -0.64
RTF1-201ENST00000389629 IGLV11-55A0A075B6I3 123 aa11.05□□□□□ -0.64
RTF1-201ENST00000389629 NDUFA12Q9UI09 145 aa11.05□□□□□ -0.64
RTF1-201ENST00000389629 CHD9Q3L8U1 2897 aa11.05□□□□□ -0.64
RTF1-201ENST00000389629 WI2-2373I1.2A0A1W2PRP0 233 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 CTSGP08311 255 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 PIMREGQ9BSJ6 248 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 RUSC1-AS1Q66K80 236 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 KLK9Q9UKQ9 250 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 TRBV6-1A0A0K0K1D8 114 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 RPL39P62891 51 aaKnown RBP11.04□□□□□ -0.64
RTF1-201ENST00000389629 TRAV12-2A0A075B6T6 113 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 TCTEX1D4Q5JR98 221 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 C7orf69Q9H7B7 122 aa11.04□□□□□ -0.64
RTF1-201ENST00000389629 ATP5J2P56134 94 aa11.03□□□□□ -0.64
RTF1-201ENST00000389629 TRAV13-1A0A0B4J241 112 aa11.03□□□□□ -0.64
RTF1-201ENST00000389629 TCL1BO95988 128 aa11.03□□□□□ -0.64
RTF1-201ENST00000389629 MORN3Q6PF18 240 aaPredicted RBP11.03□□□□□ -0.64
RTF1-201ENST00000389629 BAALCQ8WXS3 180 aa11.03□□□□□ -0.64
RTF1-201ENST00000389629 MUSTN1Q8IVN3 82 aa11.02□□□□□ -0.64
RTF1-201ENST00000389629 GATD1Q8NB37 220 aa11.02□□□□□ -0.64
RTF1-201ENST00000389629 IGLV2-11P01706 119 aa11.02□□□□□ -0.64
RTF1-201ENST00000389629 DEFB1P60022 68 aa11.02□□□□□ -0.64
RTF1-201ENST00000389629 C11orf86A6NJI1 115 aa11.02□□□□□ -0.65
RTF1-201ENST00000389629 Q71RC1 249 aaPredicted RBP11.02□□□□□ -0.65
RTF1-201ENST00000389629 PRIMA1Q86XR5 153 aa11.02□□□□□ -0.65
RTF1-201ENST00000389629 UCNP55089 124 aa11.01□□□□□ -0.65
RTF1-201ENST00000389629 GAS8-AS1O95177 125 aa11.01□□□□□ -0.65
RTF1-201ENST00000389629 LINC00158P58513 81 aa11.01□□□□□ -0.65
RTF1-201ENST00000389629 SPINK13Q1W4C9 94 aa11.01□□□□□ -0.65
RTF1-201ENST00000389629 SORL1Q92673 2214 aa11.01□□□□□ -0.65
RTF1-201ENST00000389629 TRGV11A0A075B6L2 103 aa11.01□□□□□ -0.65
RTF1-201ENST00000389629 DSCAMO60469 2012 aa11.01□□□□□ -0.65
RTF1-201ENST00000389629 LINC01620Q4KN68 170 aa11□□□□□ -0.65
RTF1-201ENST00000389629 GRNP28799 593 aaKnown RBP11□□□□□ -0.65
RTF1-201ENST00000389629 CSPG4Q6UVK1 2322 aa11□□□□□ -0.65
RTF1-201ENST00000389629 FANCD2OSQ96PS1 177 aa11□□□□□ -0.65
RTF1-201ENST00000389629 TET2Q6N021 2002 aaPredicted RBP11□□□□□ -0.65
RTF1-201ENST00000389629 BPESC1Q9GZL8 116 aa11□□□□□ -0.65
RTF1-201ENST00000389629 TRAV12-1A0A0B4J245 112 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 NDUFA11Q86Y39 141 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 IGHV7-81A0A0B4J1V7 117 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 A0A0J9YXV3 536 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 H3BUX3 64 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 RBAKDNA6NC62 111 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 BUB3O43684 328 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 NPBQ8NG41 125 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 CRPP02741 224 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 ATP6V0E2Q8NHE4 81 aa10.99□□□□□ -0.65
RTF1-201ENST00000389629 IGHV3-38A0A0C4DH36 116 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 UBE2E1P51965 193 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 I3L3M4 83 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 HERV-K104P63124 156 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 PIP4P1Q86T03 277 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 C11orf68Q9H3H3 251 aaKnown RBP10.98□□□□□ -0.65
RTF1-201ENST00000389629 IGLC6P0CF74 106 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 SPANXA1Q9NS26 97 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 FAM223BA6NKX1 122 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 FAM223AQ8IWN6 122 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 TOMM6Q96B49 74 aa10.98□□□□□ -0.65
RTF1-201ENST00000389629 IGHV3-53P01767 116 aa10.97□□□□□ -0.65
RTF1-201ENST00000389629 IGHV3-16A0A0C4DH30 117 aa10.97□□□□□ -0.65
RTF1-201ENST00000389629 PAX4O43316 350 aa10.97□□□□□ -0.65
RTF1-201ENST00000389629 DAZ1Q9NQZ3 744 aaKnown RBP10.97□□□□□ -0.65
RTF1-201ENST00000389629 COL4A2P08572 1712 aa10.97□□□□□ -0.65
RTF1-201ENST00000389629 RBMY1BA6NDE4 496 aaKnown RBP10.97□□□□□ -0.65
RTF1-201ENST00000389629 RBMY1EA6NEQ0 496 aaKnown RBP10.97□□□□□ -0.65
RTF1-201ENST00000389629 RBMY1DP0C7P1 496 aaKnown RBP10.97□□□□□ -0.65
RTF1-201ENST00000389629 RBMY1A1P0DJD3 496 aaKnown RBP10.97□□□□□ -0.65
RTF1-201ENST00000389629 RBMY1CP0DJD4 496 aa10.97□□□□□ -0.65
RTF1-201ENST00000389629 CCL19Q99731 98 aa10.97□□□□□ -0.65
RTF1-201ENST00000389629 PTPRQQ9UMZ3 2332 aa10.96□□□□□ -0.65
RTF1-201ENST00000389629 SYNJ2BPP57105 145 aa10.96□□□□□ -0.65
RTF1-201ENST00000389629 ARHGAP32A7KAX9 2087 aa10.96□□□□□ -0.65
RTF1-201ENST00000389629 XGP55808 180 aa10.96□□□□□ -0.66
RTF1-201ENST00000389629 SPATA25Q9BR10 227 aa10.96□□□□□ -0.66
RTF1-201ENST00000389629 OPRPNQ99935 248 aaPredicted RBP10.96□□□□□ -0.66
RTF1-201ENST00000389629 OTOGLQ3ZCN5 2332 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 TRGV2A0A075B6R0 118 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 FAM236AA0A1B0GUQ0 79 aa10.95□□□□□ -0.66
RTF1-201ENST00000389629 FAM236BA0A1B0GV22 79 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms