RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GNRH2O43555 120 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 IGFL2Q6UWQ7 119 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 PATE2Q6UY27 113 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 CENPVL3A0A0U1RRI6 287 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 CDK2AP2O75956 126 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 BOD1L2Q8IYS8 172 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 CFHR4Q92496 578 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 TRAV13-2A0A0B4J235 113 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 I3L2K1 104 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 FOXI2Q6ZQN5 318 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 SPANXDQ9BXN6 97 aa8.95□□□□□ -0.98
PTPRF-203ENST00000372407 NUPR1O60356 82 aa8.94□□□□□ -0.98
PTPRF-203ENST00000372407 C3orf56Q8N813 242 aa8.94□□□□□ -0.98
PTPRF-203ENST00000372407 CARD19Q96LW7 228 aa8.94□□□□□ -0.98
PTPRF-203ENST00000372407 Q96MF0 132 aa8.94□□□□□ -0.98
PTPRF-203ENST00000372407 GATA1P15976 413 aaPredicted RBP8.94□□□□□ -0.98
PTPRF-203ENST00000372407 CFC1BP0CG36 223 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 CFC1P0CG37 223 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 ABCA2Q9BZC7 2435 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 CCL25O15444 150 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 NAV3Q8IVL0 2385 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 NAV2Q8IVL1 2488 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 IGHV7-81A0A0B4J1V7 117 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 HAMPP81172 84 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 FAM167A-AS1Q96KT0 104 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 IGLV11-55A0A075B6I3 123 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 SPRNQ5BIV9 151 aa8.93□□□□□ -0.98
PTPRF-203ENST00000372407 NTN5Q8WTR8 489 aaPredicted RBP8.93□□□□□ -0.98
PTPRF-203ENST00000372407 CTSGP08311 255 aa8.92□□□□□ -0.98
PTPRF-203ENST00000372407 LINC01545Q5VT33 79 aa8.92□□□□□ -0.98
PTPRF-203ENST00000372407 HOXB4P17483 251 aaPredicted RBP8.92□□□□□ -0.98
PTPRF-203ENST00000372407 ANKRD39Q53RE8 183 aa8.92□□□□□ -0.98
PTPRF-203ENST00000372407 RNASE13Q5GAN3 156 aaKnown RBP8.92□□□□□ -0.98
PTPRF-203ENST00000372407 Q6ZVH6 145 aa8.92□□□□□ -0.98
PTPRF-203ENST00000372407 SCRT2Q9NQ03 307 aa8.92□□□□□ -0.98
PTPRF-203ENST00000372407 NPBQ8NG41 125 aa8.92□□□□□ -0.98
PTPRF-203ENST00000372407 BUB3O43684 328 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 GRNP28799 593 aaKnown RBP8.91□□□□□ -0.98
PTPRF-203ENST00000372407 HOXD3P31249 432 aaPredicted RBP8.91□□□□□ -0.98
PTPRF-203ENST00000372407 MSRB1Q9NZV6 116 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 SPTBN4Q9H254 2564 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 NKAPP1Q8N9T2 125 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 TMEM126AQ9H061 195 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 ARHGAP21Q5T5U3 1957 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 ANGP03950 147 aaKnown RBP8.91□□□□□ -0.98
PTPRF-203ENST00000372407 TDRG1Q3Y452 100 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 VPREB3Q9UKI3 123 aa8.91□□□□□ -0.98
PTPRF-203ENST00000372407 IGHV4-59P01825 116 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 APOC4P55056 127 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 DEFB112Q30KQ8 113 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 LINC00173Q6ZV60 143 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 U3KQE9 123 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 IFITM1P13164 125 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 IGF2BP2-AS1Q96M15 143 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 PRORYQ9H606 182 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 HIVEP3Q5T1R4 2406 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 CRLF1O75462 422 aa8.9□□□□□ -0.98
PTPRF-203ENST00000372407 IGKV1OR2-108A0A075B7D4 117 aa8.9□□□□□ -0.99
PTPRF-203ENST00000372407 SPRY2O43597 315 aa8.9□□□□□ -0.99
PTPRF-203ENST00000372407 IGFBPL1Q8WX77 278 aa8.89□□□□□ -0.99
PTPRF-203ENST00000372407 Q9H8V8 135 aa8.89□□□□□ -0.99
PTPRF-203ENST00000372407 CEP295Q9C0D2 2601 aa8.89□□□□□ -0.99
PTPRF-203ENST00000372407 IGLV1-47P01700 117 aa8.89□□□□□ -0.99
PTPRF-203ENST00000372407 RPL32P62910 135 aaKnown RBP8.88□□□□□ -0.99
PTPRF-203ENST00000372407 ANKRD29Q8N6D5 301 aa8.88□□□□□ -0.99
PTPRF-203ENST00000372407 GTSF1Q8WW33 167 aa8.88□□□□□ -0.99
PTPRF-203ENST00000372407 RPL39LQ96EH5 51 aaKnown RBP8.88□□□□□ -0.99
PTPRF-203ENST00000372407 AJUBAQ96IF1 538 aa8.88□□□□□ -0.99
PTPRF-203ENST00000372407 RBMY1FQ15415 496 aaKnown RBP8.88□□□□□ -0.99
PTPRF-203ENST00000372407 RITA1Q96K30 269 aa8.88□□□□□ -0.99
PTPRF-203ENST00000372407 DENND4AQ7Z401 1863 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.87□□□□□ -0.99
PTPRF-203ENST00000372407 IGKV2-29A2NJV5 120 aaPredicted RBP8.87□□□□□ -0.99
PTPRF-203ENST00000372407 IGLL5B9A064 214 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 Q8N9W7 124 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 C15orf53Q8NAA6 179 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 DSCR8Q96T75 97 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 TRAV25A0A0B4J276 109 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 IGHV4-61A0A0C4DH41 118 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 A0A0J9YXV3 536 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 BLCAPP62952 87 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 NOP10Q9NPE3 64 aaKnown RBP8.87□□□□□ -0.99
PTPRF-203ENST00000372407 DSCAML1Q8TD84 2053 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 KIAA1549LQ6ZVL6 1849 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 IGHG4P01861 327 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 C16orf54Q6UWD8 224 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 SLC25A29Q8N8R3 303 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 TEX48A0A1B0GUV7 120 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 HERV-K104P63124 156 aa8.87□□□□□ -0.99
PTPRF-203ENST00000372407 A0A096LPF7 62 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 PRSS47A8MTI9 375 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 CRYGCP07315 174 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 ZFP2Q6ZN57 461 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 TINCRA0A1B0GVN0 87 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 IGLV2-14P01704 120 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 CRYBA4P53673 196 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 SUMO4Q6EEV6 95 aa8.86□□□□□ -0.99
PTPRF-203ENST00000372407 SH2D6Q7Z4S9 175 aa8.85□□□□□ -0.99
PTPRF-203ENST00000372407 RNF152Q8N8N0 203 aa8.85□□□□□ -0.99
PTPRF-203ENST00000372407 TEX22C9J3V5 150 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms