RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 Q9UFV3 132 aa5.15□□□□□ -1.59
VPS39-202ENST00000348544 CNOT1A5YKK6 2376 aaKnown RBP5.15□□□□□ -1.59
VPS39-202ENST00000348544 GAGE12JA6NER3 117 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 J3KRW8 73 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 M0QXV9 152 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 GAGE7O76087 117 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 IGHV3-33P01772 117 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 GAGE12FP0CL80 117 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 GAGE12GP0CL81 117 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 GAGE12IP0CL82 117 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 ASIPP42127 132 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 HERV-K104P63124 156 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 GAGE4Q13068 117 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 GPHB5Q86YW7 130 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 Q8N1Y9 231 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 NTN5Q8WTR8 489 aaPredicted RBP5.14□□□□□ -1.59
VPS39-202ENST00000348544 ODF3Q96PU9 254 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 FAM110AQ9BQ89 295 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 DCHS2Q6V1P9 2916 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 MAP1BP46821 2468 aaKnown RBP5.14□□□□□ -1.59
VPS39-202ENST00000348544 MGAQ8IWI9 3026 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 A4D1N5 150 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 IGIPA6NJ69 53 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 SNCGO76070 127 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 MGPP08493 103 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 RPL32P62910 135 aaKnown RBP5.14□□□□□ -1.59
VPS39-202ENST00000348544 SMIM20Q8N5G0 67 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 ZNRF2Q8NHG8 242 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 DPH3P1Q9H4G8 78 aa5.14□□□□□ -1.59
VPS39-202ENST00000348544 RPL39P62891 51 aaKnown RBP5.13□□□□□ -1.59
VPS39-202ENST00000348544 C15orf32Q32M92 178 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 TMEM263Q8WUH6 116 aaKnown RBP5.13□□□□□ -1.59
VPS39-202ENST00000348544 TP53TG1Q9Y2A0 90 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 IGHV7-81A0A0B4J1V7 117 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 TEX49A0A1B0GTD5 131 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 H7C2G1 150 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 CLEC3BP05452 202 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 IFITM1P13164 125 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 FAM159AQ6UWV7 190 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 LY6G5BQ8NDX9 201 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 FAM57AQ8TBR7 257 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 TIMD4Q96H15 378 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 C20orf173Q96LM9 149 aa5.13□□□□□ -1.59
VPS39-202ENST00000348544 ODF3BA8MYP8 253 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 DEFB1P60022 68 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 HERVK_113P61574 105 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 Q8N6K4 173 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 ZFAND2AQ8N6M9 145 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 MRPL53Q96EL3 112 aaKnown RBP5.12□□□□□ -1.59
VPS39-202ENST00000348544 CCDC140Q96MF4 163 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 HIF1ANQ9NWT6 349 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 J3QQQ9 107 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 BRI3O95415 125 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 PMVKQ15126 192 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 LINC01620Q4KN68 170 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 TTC32Q5I0X7 151 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 TMEM170BQ5T4T1 132 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 Q6Q795 121 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 APC2O95996 2303 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 CACNA1BQ00975 2339 aa5.12□□□□□ -1.59
VPS39-202ENST00000348544 SCGB2A1O75556 95 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 P0DMU3 169 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 FAM231AP0DMU4 169 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 FAM231CP0DMU5 169 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 ARL3P36405 182 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 LINC00315P59091 139 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 CLEC19AQ6UXS0 136 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 C15orf53Q8NAA6 179 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 PHLDA3Q9Y5J5 127 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 SVEP1Q4LDE5 3571 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 MUC4Q99102 2169 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 IGHV1-69DA0A0B4J2H0 117 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 RNASE3P12724 160 aaKnown RBP5.11□□□□□ -1.59
VPS39-202ENST00000348544 RPL13AP40429 203 aaKnown RBP5.11□□□□□ -1.59
VPS39-202ENST00000348544 TCF15Q12870 199 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 ZNF876PQ49A33 203 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 PAPPA-AS1Q5QFB9 102 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 IGFL3Q6UXB1 125 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 ITLN2Q8WWU7 325 aaPredicted RBP5.11□□□□□ -1.59
VPS39-202ENST00000348544 LINC01600Q96MT4 127 aa5.11□□□□□ -1.59
VPS39-202ENST00000348544 A0A0B4J2C4 111 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 GNRH2O43555 120 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 LY6HO94772 140 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 IGHV4-39P01824 125 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 S100A4P26447 101 aaKnown RBP5.1□□□□□ -1.59
VPS39-202ENST00000348544 ABCA4P78363 2273 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 ECSCRQ19T08 205 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 MUSTN1Q8IVN3 82 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 POM121L12Q8N7R1 296 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 BSNQ9UPA5 3926 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 KIF25-AS1Q9Y6Z4 181 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 LRBAP50851 2863 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 PIEZO2Q9H5I5 2752 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 TRAV2A0A0B4J234 112 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 TRAV8-4A0A0B4J246 113 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 POLR2KP53803 58 aaKnown RBP5.1□□□□□ -1.59
VPS39-202ENST00000348544 Q8N9W7 124 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 FAM110DQ8TAY7 271 aaPredicted RBP5.1□□□□□ -1.59
VPS39-202ENST00000348544 JPT2Q9H910 190 aa5.1□□□□□ -1.59
VPS39-202ENST00000348544 U3KQE9 123 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms