RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 NCR2O95944 276 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 RAB4AP20338 218 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 CKS2P33552 79 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 TDRG1Q3Y452 100 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 FAM19A2Q8N3H0 131 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 URB1-AS1Q96HZ7 61 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 PRELID3AQ96N28 172 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 U3KQK5 164 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 LINC00482Q8N8I6 264 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 SCRT2Q9NQ03 307 aa9.88□□□□□ -0.83
HMGB1-202ENST00000339872 IGHV1OR15-1A0A075B7D0 117 aa9.87□□□□□ -0.83
HMGB1-202ENST00000339872 CRXO43186 299 aaPredicted RBP9.87□□□□□ -0.83
HMGB1-202ENST00000339872 NIT2Q9NQR4 276 aa9.87□□□□□ -0.83
HMGB1-202ENST00000339872 RBMY1A1P0DJD3 496 aaKnown RBP9.87□□□□□ -0.83
HMGB1-202ENST00000339872 RBMY1CP0DJD4 496 aa9.87□□□□□ -0.83
HMGB1-202ENST00000339872 RBMY1FQ15415 496 aaKnown RBP9.87□□□□□ -0.83
HMGB1-202ENST00000339872 CDPF1Q6NVV7 123 aa9.86□□□□□ -0.83
HMGB1-202ENST00000339872 Q6ZWC4 215 aa9.86□□□□□ -0.83
HMGB1-202ENST00000339872 STHQ8IWL8 128 aa9.86□□□□□ -0.83
HMGB1-202ENST00000339872 Q8N1Y9 231 aa9.86□□□□□ -0.83
HMGB1-202ENST00000339872 BAHCC1Q9P281 2608 aa9.86□□□□□ -0.83
HMGB1-202ENST00000339872 LINC00614P0C842 121 aa9.85□□□□□ -0.83
HMGB1-202ENST00000339872 JOSD1Q15040 202 aaPredicted RBP9.85□□□□□ -0.83
HMGB1-202ENST00000339872 OR2K2Q8NGT1 345 aa9.85□□□□□ -0.83
HMGB1-202ENST00000339872 CHCHD1Q96BP2 118 aaKnown RBP9.85□□□□□ -0.83
HMGB1-202ENST00000339872 MUC4Q99102 2169 aa9.85□□□□□ -0.83
HMGB1-202ENST00000339872 IGHV3-16A0A0C4DH30 117 aa9.85□□□□□ -0.83
HMGB1-202ENST00000339872 CYSRT1A8MQ03 144 aa9.85□□□□□ -0.83
HMGB1-202ENST00000339872 NPYP01303 97 aa9.85□□□□□ -0.83
HMGB1-202ENST00000339872 LOC389332A0A1B0GUA5 103 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 GAS8-AS1O95177 125 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 PPBPP02775 128 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 PMCHL1Q16048 86 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 PRSS3P2Q8NHM4 247 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 MDFICQ9P1T7 246 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 CBY3A6NI87 242 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 HTN1P15515 57 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 AP1S3Q96PC3 154 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 CITED1Q99966 193 aa9.84□□□□□ -0.83
HMGB1-202ENST00000339872 TRAV26-2A0A0B4J265 109 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 NXPH4O95158 308 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 C14orf178Q8N769 122 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-202ENST00000339872 C9orf85Q96MD7 179 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 TRGV11A0A075B6L2 103 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 IGHV1-24A0A0C4DH33 117 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 GATA1P15976 413 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-202ENST00000339872 IFI27P40305 119 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-202ENST00000339872 CMC4P56277 68 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-202ENST00000339872 BEAN1Q3B7T3 259 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 FA2HQ7L5A8 372 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 TRPT1Q86TN4 253 aaKnown RBP9.83□□□□□ -0.84
HMGB1-202ENST00000339872 CLUHP3Q96NS8 147 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 WFDC10AQ9H1F0 79 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 DPH3P1Q9H4G8 78 aa9.83□□□□□ -0.84
HMGB1-202ENST00000339872 INSP01308 110 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 AP5S1Q9NUS5 200 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 NIPBLQ6KC79 2804 aaeCLIP9.82□□□□□ -0.84
HMGB1-202ENST00000339872 PCP4L1A6NKN8 68 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 TNFRSF6BO95407 300 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 SCGB1D1O95968 90 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 MGPP08493 103 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 KRTDAPP60985 99 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 LAMTOR2Q9Y2Q5 125 aa9.82□□□□□ -0.84
HMGB1-202ENST00000339872 SPATA3Q8NHX4 192 aa9.81□□□□□ -0.84
HMGB1-202ENST00000339872 MAP1LC3AQ9H492 121 aa9.81□□□□□ -0.84
HMGB1-202ENST00000339872 XCL2Q9UBD3 114 aa9.81□□□□□ -0.84
HMGB1-202ENST00000339872 FAM110AQ9BQ89 295 aa9.81□□□□□ -0.84
HMGB1-202ENST00000339872 SYT8Q8NBV8 401 aa9.8□□□□□ -0.84
HMGB1-202ENST00000339872 MRAP2Q96G30 205 aa9.8□□□□□ -0.84
HMGB1-202ENST00000339872 LINC01587Q99440 93 aa9.8□□□□□ -0.84
HMGB1-202ENST00000339872 JPT2Q9H910 190 aa9.8□□□□□ -0.84
HMGB1-202ENST00000339872 C19orf73Q9NVV2 129 aa9.8□□□□□ -0.84
HMGB1-202ENST00000339872 PRM2P04554 102 aa9.79□□□□□ -0.84
HMGB1-202ENST00000339872 SMIM17P0DL12 118 aa9.79□□□□□ -0.84
HMGB1-202ENST00000339872 NUTF2P61970 127 aaKnown RBP9.79□□□□□ -0.84
HMGB1-202ENST00000339872 C20orf144Q9BQM9 153 aa9.79□□□□□ -0.84
HMGB1-202ENST00000339872 JMJD1CQ15652 2540 aa9.79□□□□□ -0.84
HMGB1-202ENST00000339872 NRACQ8N912 160 aa9.79□□□□□ -0.84
HMGB1-202ENST00000339872 A0A087WWL8 130 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 C3orf79P0CE67 100 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 C9orf66Q5T8R8 295 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 TMEM208Q9BTX3 173 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 TENM1Q9UKZ4 2725 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 LEPROTL1O95214 131 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 INSL3P51460 131 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 KIF25-AS1Q9Y6Z4 181 aa9.78□□□□□ -0.84
HMGB1-202ENST00000339872 IGHV3OR16-12A0A075B7B8 117 aa9.77□□□□□ -0.85
HMGB1-202ENST00000339872 RPL35AP18077 110 aaKnown RBP9.77□□□□□ -0.85
HMGB1-202ENST00000339872 ZNF415Q09FC8 603 aa9.77□□□□□ -0.85
HMGB1-202ENST00000339872 ZNF876PQ49A33 203 aa9.77□□□□□ -0.85
HMGB1-202ENST00000339872 FAM74A4Q5TZK3 123 aa9.77□□□□□ -0.85
HMGB1-202ENST00000339872 KRTAP24-1Q3LI83 254 aa9.77□□□□□ -0.85
HMGB1-202ENST00000339872 LINC00467Q9BRT7 94 aa9.77□□□□□ -0.85
HMGB1-202ENST00000339872 NXT2Q9NPJ8 142 aaKnown RBP9.77□□□□□ -0.85
HMGB1-202ENST00000339872 TEP1Q99973 2627 aaKnown RBP9.76□□□□□ -0.85
HMGB1-202ENST00000339872 LINC00315P59091 139 aa9.76□□□□□ -0.85
HMGB1-202ENST00000339872 S100A12P80511 92 aa9.76□□□□□ -0.85
HMGB1-202ENST00000339872 LINC00173Q6ZV60 143 aa9.76□□□□□ -0.85
HMGB1-202ENST00000339872 C1orf158Q8N1D5 194 aa9.76□□□□□ -0.85
HMGB1-202ENST00000339872 RASL10AQ92737 203 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms