RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 FOXC2Q99958 501 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 SPANXA1Q9NS26 97 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 TMEM14CQ9P0S9 112 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.3□□□□□ -1.727e-7■■■■■ 28.6
CSDE1-202ENST00000339438 IL4P05112 153 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 RPL13AP40429 203 aaKnown RBP4.3□□□□□ -1.72
CSDE1-202ENST00000339438 BSPH1Q075Z2 132 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 EBI3Q14213 229 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 GOLT1AQ6ZVE7 132 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 ENY2Q9NPA8 101 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 MSRB1Q9NZV6 116 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 SIGLEC9Q9Y336 463 aa4.3□□□□□ -1.72
CSDE1-202ENST00000339438 A0A1W2PPI3 338 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 J3QKU1 62 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 ATP5LO75964 103 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 LY6HO94772 140 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 CFC1BP0CG36 223 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 CFC1P0CG37 223 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 PRB4P10163 310 aaPredicted RBP4.29□□□□□ -1.72
CSDE1-202ENST00000339438 EDDM3AQ14507 147 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 TWIST1Q15672 202 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 LINC01559Q495D7 138 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 SIGLEC15Q6ZMC9 328 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 SLC25A39Q9BZJ4 359 aaPredicted RBP4.29□□□□□ -1.72
CSDE1-202ENST00000339438 SMIM9A6NGZ8 99 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 SFTA2Q6UW10 78 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 Q8N1Y9 231 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 TMEM160Q9NX00 188 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 ZNRD1Q9P1U0 126 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 SLC25A15Q9Y619 301 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 TMSB15BA0A087X1C1 80 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 A8MWV9 139 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 IGKV3-15P01624 115 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 GATA1P15976 413 aaPredicted RBP4.29□□□□□ -1.72
CSDE1-202ENST00000339438 C3orf56Q8N813 242 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 CHCHD5Q9BSY4 110 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 LINC00574Q9H8X3 128 aa4.29□□□□□ -1.72
CSDE1-202ENST00000339438 FAT3Q8TDW7 4589 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 TRBV7-7A0A0K0K1E9 115 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 LYNX1G3V0Z9 82 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 TNFRSF6BO95407 300 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 IGLV2-23P01705 113 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 LYNX1P0DP58 116 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 RPL7P18124 248 aaKnown RBP4.28□□□□□ -1.72
CSDE1-202ENST00000339438 NRACQ8N912 160 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 OR11H6Q8NGC7 330 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 AMELXQ99217 191 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 GNG12Q9UBI6 72 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 ABCA1O95477 2261 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 ARHGAP32A7KAX9 2087 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 ORM2P19652 201 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 CD40P25942 277 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 CKS2P33552 79 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 ZNF80P51504 273 aaPredicted RBP4.28□□□□□ -1.72
CSDE1-202ENST00000339438 PRB3Q04118 309 aaPredicted RBP4.28□□□□□ -1.72
CSDE1-202ENST00000339438 ADIPOQQ15848 244 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 DTX2Q86UW9 622 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 OR10J6PQ8NGY7 276 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 CCL17Q92583 94 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 DYNLRB1Q9NP97 96 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 ANKRD17O75179 2603 aaKnown RBP4.28□□□□□ -1.72
CSDE1-202ENST00000339438 TRBV19A0A075B6N1 114 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 TRAV12-1A0A0B4J245 112 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 A4D1N5 150 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 DUSP14O95147 198 aaKnown RBP4.28□□□□□ -1.72
CSDE1-202ENST00000339438 EGR2P11161 476 aaPredicted RBP4.28□□□□□ -1.72
CSDE1-202ENST00000339438 PRDX2P32119 198 aa4.28□□□□□ -1.72
CSDE1-202ENST00000339438 SLC25A20O43772 301 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 SNCGO76070 127 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 IGHV3-30P01768 117 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 IGHV3-30-5P0DP03 117 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 PLNP26678 52 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 EFNA4P52798 201 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 TTC32Q5I0X7 151 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 C10orf55Q5SWW7 151 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 TRPT1Q86TN4 253 aaKnown RBP4.27□□□□□ -1.73
CSDE1-202ENST00000339438 Q8N8P6 123 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 NEXN-AS1Q8NBZ9 246 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 PRR25Q96S07 402 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 MALRD1Q5VYJ5 2156 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 TEX49A0A1B0GTD5 131 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.27□□□□□ -1.73
CSDE1-202ENST00000339438 SH2D1AO60880 128 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 PRSS1P07477 247 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 SLC25A16P16260 332 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 DEFB121Q5J5C9 76 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 HIST2H2BCQ6DN03 193 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 ZNF833PQ6ZTB9 187 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 FAM19A5Q7Z5A7 132 aaPredicted RBP4.27□□□□□ -1.73
CSDE1-202ENST00000339438 NXT2Q9NPJ8 142 aaKnown RBP4.27□□□□□ -1.73
CSDE1-202ENST00000339438 HECTD1Q9ULT8 2610 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 A0A0J9YY99 117 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 TIMM23O14925 209 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 PLXNB1O43157 2135 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 Q6ZS46 218 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 ZNRF1Q8ND25 227 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 OR4C13Q8NGP0 309 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 TMEM101Q96IK0 257 aa4.27□□□□□ -1.73
CSDE1-202ENST00000339438 LOC107984156A0A0G2JMH3 177 aa4.26□□□□□ -1.73
CSDE1-202ENST00000339438 RNF223E7ERA6 249 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms