RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF469Q96JG9 3925 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-201ENST00000326004 TACC2O95359 2948 aa1.54□□□□□ -2.16
HMGB1-201ENST00000326004 ZGRF1Q86YA3 2104 aa1.54□□□□□ -2.16
HMGB1-201ENST00000326004 MAP1AP78559 2803 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-201ENST00000326004 A0A087WWC5 75 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 TRAV38-1A0A0B4J264 116 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 FAM236DA0A1B0GTK5 79 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 A0A1B0GW64 132 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 TMEM189A5PLL7 270 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 MAP1LC3B2A6NCE7 125 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 C19orf71A6NCJ1 209 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 FAM159BA6NKW6 160 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 KNCNA6PVL3 124 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 A8MUN3 132 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 GGTLC3B5MD39 225 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 C9JCJ5 164 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 H7C1C5 153 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 M0R129 80 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 M0R2Z0 102 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 YPEL1O60688 119 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 OR7C1O76099 320 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-201ENST00000326004 PROSCO94903 275 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 UBL3O95164 117 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 CSN2P05814 226 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SPINK8P0C7L1 97 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 AKAIN1P0CW23 69 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SMIM17P0DL12 118 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 IGLC2P0DOY2 106 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 IGLC3P0DOY3 106 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 FAM236CP0DP71 79 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SLC25A4P12235 298 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 CPMP14384 443 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 NPPCP23582 126 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 CMPK1P30085 196 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 GUCA1AP43080 201 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-201ENST00000326004 RHOBP62745 196 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 DYNLT1P63172 113 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 PTPRJQ12913 1337 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 CATR1Q13166 79 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 ZNF345Q14585 488 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 IAH1Q2TAA2 248 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-201ENST00000326004 LGALS9BQ3B8N2 356 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 KRTAP25-1Q3LHN0 102 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SPATA45Q537H7 98 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 LGALS9CQ6DKI2 356 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 RASL11AQ6T310 242 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 DPPA3Q6W0C5 159 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SDIM1Q6ZPB5 146 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 VPS13CQ709C8 3753 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 LYPD6Q86Y78 171 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 KRTAP13-1Q8IUC0 172 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 C20orf196Q8IYI0 205 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 DAND5Q8N907 189 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 Q8NAQ8 132 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 OR4B1Q8NGF8 309 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 OR8B12Q8NGG6 310 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 OR13C6PQ8NH95 151 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SLAMF6Q96DU3 332 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 DNAJC30Q96LL9 226 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 YPEL2Q96QA6 119 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SLC25A21Q9BQT8 299 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SNRNP25Q9BV90 132 aaKnown RBP1.53□□□□□ -2.16
HMGB1-201ENST00000326004 MAP1LC3BQ9GZQ8 125 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SLC35B3Q9H1N7 401 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 C16orf95Q9H693 158 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 TAF9BQ9HBM6 251 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 PKDREJQ9NTG1 2253 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 NAT8BQ9UHF3 227 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 CCL26Q9Y258 94 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 LSM2Q9Y333 95 aaKnown RBP1.53□□□□□ -2.16
HMGB1-201ENST00000326004 PLXND1Q9Y4D7 1925 aa1.53□□□□□ -2.16
HMGB1-201ENST00000326004 SONP18583 2426 aaKnown RBP1.52□□□□□ -2.17
HMGB1-201ENST00000326004 MYH8P13535 1937 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 PTPRDP23468 1912 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 A0A087WUU8 490 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 TRAV26-2A0A0B4J265 109 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 LOC107984640A0A0U1RRK4 108 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 A0A1B0GU33 70 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 TRDV1A0A1B0GX56 115 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 C7orf71A4D174 169 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 NAP1L6A6NFF2 107 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 K7EP34 96 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 NUPR1O60356 82 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 OR1I1O60431 355 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 SFT2D2O95562 160 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 CPSF4O95639 269 aaKnown RBP1.52□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF682O95780 498 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 CYB5AP00167 134 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 SOD1P00441 154 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 HLA-DRB1P01911 266 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 MT-ATP8P03928 68 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF728P0DKX0 622 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 CCL3P10147 92 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 SLC25A16P16260 332 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 GNG4P50150 75 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 EMP1P54849 157 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 TCTAP57738 103 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 TPPP2P59282 170 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 GNG5P63218 68 aa1.52□□□□□ -2.17
HMGB1-201ENST00000326004 FOXF1Q12946 379 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms