RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CTSZQ9UBR2 303 aa9.02□□□□□ -0.96
VPS39-201ENST00000318006 LHBP01229 141 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 UBE2E2Q96LR5 201 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 C11orf1Q9H5F2 150 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 CFHR4Q92496 578 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 KIAA1549LQ6ZVL6 1849 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 DEFB131AP59861 70 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 DYNAPQ8N1N2 210 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 KLHL30-AS1Q8NEE0 82 aa9.02□□□□□ -0.97
VPS39-201ENST00000318006 RBAKDNA6NC62 111 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 A0A1B0GX51 115 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 C22orf46C9J442 243 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 AGPAT4-IT1Q9H0P7 198 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 MUSTN1Q8IVN3 82 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 ICOSQ9Y6W8 199 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 PLCE1Q9P212 2302 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 ARFGEF3Q5TH69 2177 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 GRNP28799 593 aaKnown RBP9.01□□□□□ -0.97
VPS39-201ENST00000318006 SPRNQ5BIV9 151 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 RNF183Q96D59 192 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 TMEM243Q9BU79 118 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 LENEPQ9Y5L5 61 aa9.01□□□□□ -0.97
VPS39-201ENST00000318006 FAM167A-AS1Q96KT0 104 aa9□□□□□ -0.97
VPS39-201ENST00000318006 SPG11Q96JI7 2443 aa9□□□□□ -0.97
VPS39-201ENST00000318006 NDUFA4O00483 81 aa9□□□□□ -0.97
VPS39-201ENST00000318006 PATE2Q6UY27 113 aa9□□□□□ -0.97
VPS39-201ENST00000318006 IGHV3-16A0A0C4DH30 117 aa9□□□□□ -0.97
VPS39-201ENST00000318006 ZNRF2Q8NHG8 242 aa9□□□□□ -0.97
VPS39-201ENST00000318006 MRPL53Q96EL3 112 aaKnown RBP9□□□□□ -0.97
VPS39-201ENST00000318006 FREM1Q5H8C1 2179 aa9□□□□□ -0.97
VPS39-201ENST00000318006 IGHV3-38A0A0C4DH36 116 aa9□□□□□ -0.97
VPS39-201ENST00000318006 MAPK1IP1LQ8NDC0 245 aa9□□□□□ -0.97
VPS39-201ENST00000318006 PTPRQQ9UMZ3 2332 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 TRBV10-2A0A0K0K1G8 114 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 YPEL4Q96NS1 127 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 E9PLD3 99 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 Q6ZUT4 128 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 ORMDL1Q9P0S3 153 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 H3BT86 120 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 NXPH4O95158 308 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 NDUFC2O95298 119 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 MSRB1Q9NZV6 116 aa8.99□□□□□ -0.97
VPS39-201ENST00000318006 ODF1Q14990 250 aa8.98□□□□□ -0.97
VPS39-201ENST00000318006 Q9H8V8 135 aa8.98□□□□□ -0.97
VPS39-201ENST00000318006 ANKHD1Q8IWZ3 2542 aaKnown RBP8.98□□□□□ -0.97
VPS39-201ENST00000318006 PCDH15Q96QU1 1955 aa8.98□□□□□ -0.97
VPS39-201ENST00000318006 FOXE3Q13461 319 aa8.98□□□□□ -0.97
VPS39-201ENST00000318006 RNASE13Q5GAN3 156 aaKnown RBP8.98□□□□□ -0.97
VPS39-201ENST00000318006 CDK2AP2O75956 126 aa8.98□□□□□ -0.97
VPS39-201ENST00000318006 HERV-K104P63124 156 aa8.98□□□□□ -0.97
VPS39-201ENST00000318006 C3orf56Q8N813 242 aa8.98□□□□□ -0.97
VPS39-201ENST00000318006 TRAV12-2A0A075B6T6 113 aa8.97□□□□□ -0.97
VPS39-201ENST00000318006 PTH2Q96A98 100 aa8.97□□□□□ -0.97
VPS39-201ENST00000318006 NCOA6Q14686 2063 aaPredicted RBP8.97□□□□□ -0.97
VPS39-201ENST00000318006 SUMO4Q6EEV6 95 aa8.97□□□□□ -0.97
VPS39-201ENST00000318006 SEM1Q6ZVN7 128 aa8.97□□□□□ -0.97
VPS39-201ENST00000318006 RPL35AP18077 110 aaKnown RBP8.97□□□□□ -0.97
VPS39-201ENST00000318006 RPL39LQ96EH5 51 aaKnown RBP8.97□□□□□ -0.97
VPS39-201ENST00000318006 GNRH2O43555 120 aa8.96□□□□□ -0.97
VPS39-201ENST00000318006 CTRLP40313 264 aa8.96□□□□□ -0.97
VPS39-201ENST00000318006 PRO3102Q9H379 93 aa8.96□□□□□ -0.97
VPS39-201ENST00000318006 IGKV3D-7A0A0C4DH55 119 aa8.96□□□□□ -0.97
VPS39-201ENST00000318006 MRPL23Q16540 153 aaKnown RBP8.96□□□□□ -0.97
VPS39-201ENST00000318006 PIFOQ8TCI5 191 aa8.96□□□□□ -0.97
VPS39-201ENST00000318006 CUL9Q8IWT3 2517 aa8.96□□□□□ -0.98
VPS39-201ENST00000318006 H0YGX0 51 aa8.96□□□□□ -0.98
VPS39-201ENST00000318006 TRAV25A0A0B4J276 109 aa8.96□□□□□ -0.98
VPS39-201ENST00000318006 J3QLI3 93 aa8.96□□□□□ -0.98
VPS39-201ENST00000318006 ATP5G1P05496 136 aa8.96□□□□□ -0.98
VPS39-201ENST00000318006 ZFP2Q6ZN57 461 aa8.96□□□□□ -0.98
VPS39-201ENST00000318006 NDUFV3P56181 108 aaKnown RBP8.95□□□□□ -0.98
VPS39-201ENST00000318006 XCL2Q9UBD3 114 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 A0A0J9YXV3 536 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 A0A1B0GXF2 115 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 F6UB75 175 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 MT-ATP8P03928 68 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 SPANXB1Q9NS25 103 aaPredicted RBP8.95□□□□□ -0.98
VPS39-201ENST00000318006 CACNA1AO00555 2505 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 DEFB130BP0DP73 79 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 DEFB130AP0DP74 79 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 Q96MF0 132 aa8.95□□□□□ -0.98
VPS39-201ENST00000318006 ADAMTS9Q9P2N4 1935 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 Q71RC1 249 aaPredicted RBP8.94□□□□□ -0.98
VPS39-201ENST00000318006 MUC22E2RYF6 1773 aaPredicted RBP8.94□□□□□ -0.98
VPS39-201ENST00000318006 ALPK3Q96L96 1907 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 C19orf71A6NCJ1 209 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 IGKV1-17P01599 117 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 HOXB4P17483 251 aaPredicted RBP8.94□□□□□ -0.98
VPS39-201ENST00000318006 SLC25A29Q8N8R3 303 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 CRYGCP07315 174 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 BAALCQ8WXS3 180 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 TOMM6Q96B49 74 aa8.94□□□□□ -0.98
VPS39-201ENST00000318006 IGHV7-4-1A0A0J9YVY3 117 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 TRBV6-1A0A0K0K1D8 114 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 WISP2O76076 250 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 IGFBPL1Q8WX77 278 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 I3L2K1 104 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 IGHG2P01859 326 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 PSMB8P28062 276 aa8.93□□□□□ -0.98
VPS39-201ENST00000318006 NDUFA11Q86Y39 141 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms