RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 IGLV11-55A0A075B6I3 123 aa14.94□□□□□ -0.02
UPF1-201ENST00000262803 ETDCA0A1B0GVM5 59 aa14.94□□□□□ -0.02
UPF1-201ENST00000262803 C16orf54Q6UWD8 224 aa14.94□□□□□ -0.02
UPF1-201ENST00000262803 HAMPP81172 84 aa14.94□□□□□ -0.02
UPF1-201ENST00000262803 EML6Q6ZMW3 1958 aa14.94□□□□□ -0.02
UPF1-201ENST00000262803 NDUFS7O75251 213 aa14.94□□□□□ -0.02
UPF1-201ENST00000262803 CDPF1Q6NVV7 123 aa14.94□□□□□ -0.02
UPF1-201ENST00000262803 NUP210Q8TEM1 1887 aaPredicted RBP14.94□□□□□ -0.02
UPF1-201ENST00000262803 IGHV7-81A0A0B4J1V7 117 aa14.93□□□□□ -0.02
UPF1-201ENST00000262803 CXCL5P42830 114 aa14.93□□□□□ -0.02
UPF1-201ENST00000262803 ORMDL1Q9P0S3 153 aa14.93□□□□□ -0.02
UPF1-201ENST00000262803 ETDBQ3ZM63 59 aa14.93□□□□□ -0.02
UPF1-201ENST00000262803 COA6Q5JTJ3 125 aaKnown RBP14.93□□□□□ -0.02
UPF1-201ENST00000262803 Q71RC1 249 aaPredicted RBP14.93□□□□□ -0.02
UPF1-201ENST00000262803 PTPRQQ9UMZ3 2332 aa14.93□□□□□ -0.02
UPF1-201ENST00000262803 EGR2P11161 476 aaPredicted RBP14.93□□□□□ -0.02
UPF1-201ENST00000262803 FBXL19-AS1Q494R0 122 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 ZNF503Q96F45 646 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 DKK2Q9UBU2 259 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 FUSP35637 526 aaKnown RBP eCLIP14.92□□□□□ -0.02
UPF1-201ENST00000262803 PLXNB3Q9ULL4 1909 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 H0YGX0 51 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 C9orf153Q5TBE3 101 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 ZNF747Q9BV97 191 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 IGHV4-30-2A0A087WSY4 118 aa14.92□□□□□ -0.02
UPF1-201ENST00000262803 I3L2K1 104 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 BUB3O43684 328 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 K7EP34 96 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 CARD19Q96LW7 228 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 TIRAPP58753 221 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 CAMK2N2Q96S95 79 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 LRRC75A-AS1Q8N1F1 130 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 C4orf3Q8WVX3 66 aa14.91□□□□□ -0.02
UPF1-201ENST00000262803 ACYP1P07311 99 aa14.9□□□□□ -0.02
UPF1-201ENST00000262803 GRNP28799 593 aaKnown RBP14.9□□□□□ -0.02
UPF1-201ENST00000262803 XCL1P47992 114 aa14.9□□□□□ -0.02
UPF1-201ENST00000262803 COX7A2LO14548 114 aa14.9□□□□□ -0.02
UPF1-201ENST00000262803 GPHB5Q86YW7 130 aa14.9□□□□□ -0.02
UPF1-201ENST00000262803 K7EP13 123 aa14.9□□□□□ -0.02
UPF1-201ENST00000262803 A0A0J9YY99 117 aa14.9□□□□□ -0.02
UPF1-201ENST00000262803 CLPSL1A2RUU4 121 aa14.9□□□□□ -0.02
UPF1-201ENST00000262803 F6UB75 175 aa14.89□□□□□ -0.03
UPF1-201ENST00000262803 SPG11Q96JI7 2443 aa14.89□□□□□ -0.03
UPF1-201ENST00000262803 GYPEP15421 78 aa14.89□□□□□ -0.03
UPF1-201ENST00000262803 C5orf56Q8N8D9 126 aa14.89□□□□□ -0.03
UPF1-201ENST00000262803 AJUBAQ96IF1 538 aa14.89□□□□□ -0.03
UPF1-201ENST00000262803 DYSFO75923 2080 aa14.88□□□□□ -0.03
UPF1-201ENST00000262803 A0A1W2PPM0 123 aa14.88□□□□□ -0.03
UPF1-201ENST00000262803 MORN5Q5VZ52 161 aa14.88□□□□□ -0.03
UPF1-201ENST00000262803 PLCE1Q9P212 2302 aa14.88□□□□□ -0.03
UPF1-201ENST00000262803 A0A096LPF7 62 aa14.88□□□□□ -0.03
UPF1-201ENST00000262803 SLURP1P55000 103 aa14.88□□□□□ -0.03
UPF1-201ENST00000262803 ATRXP46100 2492 aa14.87□□□□□ -0.03
UPF1-201ENST00000262803 GNRH2O43555 120 aa14.87□□□□□ -0.03
UPF1-201ENST00000262803 IGHV4-38-2P0DP08 117 aa14.87□□□□□ -0.03
UPF1-201ENST00000262803 PATE2Q6UY27 113 aa14.87□□□□□ -0.03
UPF1-201ENST00000262803 IGKV1-17P01599 117 aa14.87□□□□□ -0.03
UPF1-201ENST00000262803 Q9H8V8 135 aa14.87□□□□□ -0.03
UPF1-201ENST00000262803 CRYGCP07315 174 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 ADORA2A-AS1P86434 159 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 K7EIM0 57 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 K7ERJ3 54 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 NDUFB1O75438 58 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 MRAPQ8TCY5 172 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 KIR2DL5BA0A0G2JN68 375 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 KIR2DL5BA0A0G2JPC4 375 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 KIR2DL5AQ8N109 375 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 CFC1BP0CG36 223 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 CFC1P0CG37 223 aa14.86□□□□□ -0.03
UPF1-201ENST00000262803 NDUFA1O15239 70 aa14.85□□□□□ -0.03
UPF1-201ENST00000262803 NUPR1O60356 82 aa14.85□□□□□ -0.03
UPF1-201ENST00000262803 RPL18AQ02543 176 aaKnown RBP14.85□□□□□ -0.03
UPF1-201ENST00000262803 ACACBO00763 2458 aa14.85□□□□□ -0.03
UPF1-201ENST00000262803 C14orf177Q52M58 125 aa14.85□□□□□ -0.03
UPF1-201ENST00000262803 Q8N9W7 124 aa14.85□□□□□ -0.03
UPF1-201ENST00000262803 RITA1Q96K30 269 aa14.85□□□□□ -0.03
UPF1-201ENST00000262803 FREM1Q5H8C1 2179 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 hADV29S1A0JD25 119 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 Q6ZQT7 251 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 C9orf47Q6ZRZ4 202 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 MUC6Q6W4X9 2439 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 TRBV6-1A0A0K0K1D8 114 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 WI2-2373I1.2A0A1W2PRP0 233 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 C2orf70A6NJV1 201 aa14.84□□□□□ -0.03
UPF1-201ENST00000262803 CTSGP08311 255 aa14.83□□□□□ -0.03
UPF1-201ENST00000262803 GATA1P15976 413 aaPredicted RBP14.83□□□□□ -0.03
UPF1-201ENST00000262803 H3BMG7 143 aa14.83□□□□□ -0.04
UPF1-201ENST00000262803 IGHG2P01859 326 aa14.83□□□□□ -0.04
UPF1-201ENST00000262803 Q9HAA7 133 aa14.83□□□□□ -0.04
UPF1-201ENST00000262803 SMAD5-AS1Q9Y6J3 95 aa14.83□□□□□ -0.04
UPF1-201ENST00000262803 CLPSL2Q6UWE3 100 aa14.83□□□□□ -0.04
UPF1-201ENST00000262803 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.83□□□□□ -0.04
UPF1-201ENST00000262803 IGKV2-29A2NJV5 120 aaPredicted RBP14.83□□□□□ -0.04
UPF1-201ENST00000262803 TRAV4A0A0B4J268 109 aa14.82□□□□□ -0.04
UPF1-201ENST00000262803 LOXL1Q08397 574 aaPredicted RBP14.82□□□□□ -0.04
UPF1-201ENST00000262803 ANKRD29Q8N6D5 301 aa14.82□□□□□ -0.04
UPF1-201ENST00000262803 PCP2Q8IVA1 136 aa14.82□□□□□ -0.04
UPF1-201ENST00000262803 RNASE13Q5GAN3 156 aaKnown RBP14.82□□□□□ -0.04
UPF1-201ENST00000262803 AMTNQ6UX39 209 aa14.82□□□□□ -0.04
UPF1-201ENST00000262803 SPRY2O43597 315 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 250.1 ms