RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 CELSR1Q9NYQ6 3014 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 CDX4O14627 284 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-201ENST00000261443 ATXN8Q156A1 80 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 SEM1Q6ZVN7 128 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 RPL39LQ96EH5 51 aaKnown RBP5.53□□□□□ -1.52
CSDE1-201ENST00000261443 YAE1D1Q9NRH1 226 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 C21orf62Q9NYP8 219 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 VPREB3Q9UKI3 123 aa5.53□□□□□ -1.52
CSDE1-201ENST00000261443 APC2O95996 2303 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV4-4A0A075B6R2 117 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV3-35A0A0C4DH35 117 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 A4D1N5 150 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 RBAKDNA6NC62 111 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 F8W735 103 aaPredicted RBP5.52□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV3-33P01772 117 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV4-39P01824 125 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 Q1RN00 199 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 LINC01620Q4KN68 170 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 PAPPA-AS1Q5QFB9 102 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 C3orf56Q8N813 242 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 FANCD2OSQ96PS1 177 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 AGPAT4-IT1Q9H0P7 198 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 MDFICQ9P1T7 246 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 WNK2Q9Y3S1 2297 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 TLN1Q9Y490 2541 aaKnown RBP5.52□□□□□ -1.53
CSDE1-201ENST00000261443 CRYGDP07320 174 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 TSPEAR-AS2P59090 65 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 TMEM170BQ5T4T1 132 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 C22orf34Q6ZV56 151 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 RNF5Q99942 180 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 TMEM126AQ9H061 195 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 IGLV4-69A0A075B6H9 119 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 IGLV11-55A0A075B6I3 123 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 H3BMM0 161 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 M0R381 172 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 DUSP14O95147 198 aaKnown RBP5.52□□□□□ -1.53
CSDE1-201ENST00000261443 P0DMU3 169 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 FAM231AP0DMU4 169 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 FAM231CP0DMU5 169 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 RPL13AP40429 203 aaKnown RBP5.52□□□□□ -1.53
CSDE1-201ENST00000261443 TCF15Q12870 199 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 FOXC1Q12948 553 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 UBE2WQ96B02 151 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 CHCHD5Q9BSY4 110 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 PPDPFQ9H3Y8 114 aa5.52□□□□□ -1.53
CSDE1-201ENST00000261443 MBD3L4A6NDZ8 208 aaPredicted RBP5.51□□□□□ -1.53
CSDE1-201ENST00000261443 MBD3L3A6NE82 208 aaPredicted RBP5.51□□□□□ -1.53
CSDE1-201ENST00000261443 MBD3L5A6NJ08 208 aaPredicted RBP5.51□□□□□ -1.53
CSDE1-201ENST00000261443 TIMM23O14925 209 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 MGPP08493 103 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 ID1P41134 155 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 MBD3L2Q8NHZ7 208 aaPredicted RBP5.51□□□□□ -1.53
CSDE1-201ENST00000261443 COL6A6A6NMZ7 2263 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 LGALS9O00182 355 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 NBR2O15453 112 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 ELANEP08246 267 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 LGALS3P17931 250 aaKnown RBP5.51□□□□□ -1.53
CSDE1-201ENST00000261443 FAM27E3Q08E93 113 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 ADIPOQQ15848 244 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 PLA2G2CQ5R387 149 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 FDCSPQ8NFU4 85 aa5.51□□□□□ -1.53
CSDE1-201ENST00000261443 TMEM263Q8WUH6 116 aaKnown RBP5.51□□□□□ -1.53
CSDE1-201ENST00000261443 BEX4Q9NWD9 120 aaPredicted RBP5.51□□□□□ -1.53
CSDE1-201ENST00000261443 TRBV10-2A0A0K0K1G8 114 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 SPRY2O43597 315 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 CTSGP08311 255 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 ZNF56Q15929 161 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 C14orf178Q8N769 122 aaPredicted RBP5.5□□□□□ -1.53
CSDE1-201ENST00000261443 NUP37Q8NFH4 326 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 DPH3P1Q9H4G8 78 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 MSRB2Q9Y3D2 182 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 A0A0B4J2C4 111 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV3-66A0A0C4DH42 116 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 J3QQQ9 107 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 EIF4EBP3O60516 100 aaPredicted RBP5.5□□□□□ -1.53
CSDE1-201ENST00000261443 PMVKQ15126 192 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 ARRDC1-AS1Q9H2J1 176 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 KAAG1Q9UBP8 84 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 MRPL23Q16540 153 aaKnown RBP5.5□□□□□ -1.53
CSDE1-201ENST00000261443 C2orf82Q6UX34 121 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 DEFB104AQ8WTQ1 72 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 TP53TG1Q9Y2A0 90 aa5.5□□□□□ -1.53
CSDE1-201ENST00000261443 ZNF292O60281 2723 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 TRAV17A0A0B4J275 112 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 RNF223E7ERA6 249 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 TSHBP01222 138 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 S100A4P26447 101 aaKnown RBP5.49□□□□□ -1.53
CSDE1-201ENST00000261443 HES1Q14469 280 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 MUSTN1Q8IVN3 82 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 J3KRW8 73 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 IGFBPL1Q8WX77 278 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 AMELXQ99217 191 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 LINC01587Q99440 93 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 CHD8Q9HCK8 2581 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 NCOR2Q9Y618 2525 aa5.49□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV3OR16-13A0A075B7E8 117 aa5.48□□□□□ -1.53
CSDE1-201ENST00000261443 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.48□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV3-74A0A0B4J1X5 117 aa5.48□□□□□ -1.53
CSDE1-201ENST00000261443 IGHV1-69DA0A0B4J2H0 117 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms