RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ANXA2RQ3ZCQ2 193 aa14.79□□□□□ -0.04
CLN3-250ENST00000636839 C7orf71A4D174 169 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 SPRY2O43597 315 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 TRGC2P03986 189 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 ZFP82Q8N141 532 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 GFRA4Q9GZZ7 299 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 GNRH2O43555 120 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 LYZL1Q6UWQ5 148 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 STHQ8IWL8 128 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 DEFB125Q8N687 156 aa14.78□□□□□ -0.04
CLN3-250ENST00000636839 TYMSP04818 313 aa14.77□□□□□ -0.04
CLN3-250ENST00000636839 FOXA3P55318 350 aaPredicted RBP14.77□□□□□ -0.04
CLN3-250ENST00000636839 OXLD1Q5BKU9 147 aa14.77□□□□□ -0.04
CLN3-250ENST00000636839 PRM2P04554 102 aa14.76□□□□□ -0.05
CLN3-250ENST00000636839 ARMS2P0C7Q2 107 aa14.76□□□□□ -0.05
CLN3-250ENST00000636839 TRPT1Q86TN4 253 aaKnown RBP14.76□□□□□ -0.05
CLN3-250ENST00000636839 SRD5A3Q9H8P0 318 aa14.76□□□□□ -0.05
CLN3-250ENST00000636839 CMYA5Q8N3K9 4069 aa14.76□□□□□ -0.05
CLN3-250ENST00000636839 TRAV9-1A0A075B6T8 112 aa14.76□□□□□ -0.05
CLN3-250ENST00000636839 TSPOP30536 169 aa14.76□□□□□ -0.05
CLN3-250ENST00000636839 TP53TG3Q9ULZ0 132 aa14.76□□□□□ -0.05
CLN3-250ENST00000636839 IGLC6P0CF74 106 aa14.75□□□□□ -0.05
CLN3-250ENST00000636839 RPL35AP18077 110 aaKnown RBP14.75□□□□□ -0.05
CLN3-250ENST00000636839 CAMPP49913 170 aa14.75□□□□□ -0.05
CLN3-250ENST00000636839 FAM231BA6NCW3 169 aa14.75□□□□□ -0.05
CLN3-250ENST00000636839 MCRIP2Q9BUT9 160 aaKnown RBP14.75□□□□□ -0.05
CLN3-250ENST00000636839 XCL2Q9UBD3 114 aa14.75□□□□□ -0.05
CLN3-250ENST00000636839 TIMM8BQ9Y5J9 83 aaPredicted RBP14.75□□□□□ -0.05
CLN3-250ENST00000636839 XKRY2A2RUG3 117 aa14.74□□□□□ -0.05
CLN3-250ENST00000636839 RPS20P60866 119 aaKnown RBP14.74□□□□□ -0.05
CLN3-250ENST00000636839 FER1L6-AS1Q8NA97 138 aa14.74□□□□□ -0.05
CLN3-250ENST00000636839 PHOX2AO14813 284 aa14.73□□□□□ -0.05
CLN3-250ENST00000636839 CTAG1AP78358 180 aa14.73□□□□□ -0.05
CLN3-250ENST00000636839 FABP9Q0Z7S8 132 aa14.73□□□□□ -0.05
CLN3-250ENST00000636839 FAM110AQ9BQ89 295 aa14.73□□□□□ -0.05
CLN3-250ENST00000636839 A0A1B0GXF2 115 aa14.73□□□□□ -0.05
CLN3-250ENST00000636839 CMC4P56277 68 aaPredicted RBP14.73□□□□□ -0.05
CLN3-250ENST00000636839 RAB4BP61018 213 aa14.73□□□□□ -0.05
CLN3-250ENST00000636839 SSBP4Q9BWG4 385 aaPredicted RBP14.73□□□□□ -0.05
CLN3-250ENST00000636839 MSRB1Q9NZV6 116 aa14.73□□□□□ -0.05
CLN3-250ENST00000636839 H3BVH4 76 aa14.72□□□□□ -0.05
CLN3-250ENST00000636839 TMEM136Q6ZRR5 245 aa14.72□□□□□ -0.05
CLN3-250ENST00000636839 SNURFLB1AK76 121 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 GIG44P09565 113 aaPredicted RBP14.71□□□□□ -0.05
CLN3-250ENST00000636839 HTN1P15515 57 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 GTSCR1Q86UQ5 136 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 FRZBQ92765 325 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 TRAPPC1Q9Y5R8 145 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 A0A1B0GUT8 65 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 FAM159AQ6UWV7 190 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 LURAP1LQ8IV03 231 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 Q8N1Y9 231 aa14.71□□□□□ -0.05
CLN3-250ENST00000636839 ANK2Q01484 3957 aa14.7□□□□□ -0.06
CLN3-250ENST00000636839 CTRLP40313 264 aa14.7□□□□□ -0.06
CLN3-250ENST00000636839 OR10AG1Q8NH19 301 aa14.7□□□□□ -0.06
CLN3-250ENST00000636839 CLUHP3Q96NS8 147 aa14.7□□□□□ -0.06
CLN3-250ENST00000636839 C1orf196B1AJZ1 125 aa14.7□□□□□ -0.06
CLN3-250ENST00000636839 WIPF1O43516 503 aa14.7□□□□□ -0.06
CLN3-250ENST00000636839 RNASE3P12724 160 aaKnown RBP14.69□□□□□ -0.06
CLN3-250ENST00000636839 NTF3P20783 257 aa14.69□□□□□ -0.06
CLN3-250ENST00000636839 KRTAP10-11P60412 298 aa14.69□□□□□ -0.06
CLN3-250ENST00000636839 HBBP68871 147 aa14.69□□□□□ -0.06
CLN3-250ENST00000636839 KIAA1644Q3SXP7 199 aa14.69□□□□□ -0.06
CLN3-250ENST00000636839 MRPL18Q9H0U6 180 aaKnown RBP14.69□□□□□ -0.06
CLN3-250ENST00000636839 MDFICQ9P1T7 246 aa14.69□□□□□ -0.06
CLN3-250ENST00000636839 GNB1LQ9BYB4 327 aa14.68□□□□□ -0.06
CLN3-250ENST00000636839 IGHV1OR15-1A0A075B7D0 117 aa14.68□□□□□ -0.06
CLN3-250ENST00000636839 SLAQ13239 276 aa14.68□□□□□ -0.06
CLN3-250ENST00000636839 ATP5L2Q7Z4Y8 100 aa14.68□□□□□ -0.06
CLN3-250ENST00000636839 S100A4P26447 101 aaKnown RBP14.67□□□□□ -0.06
CLN3-250ENST00000636839 ASIPP42127 132 aa14.67□□□□□ -0.06
CLN3-250ENST00000636839 TWIST1Q15672 202 aa14.67□□□□□ -0.06
CLN3-250ENST00000636839 TDRG1Q3Y452 100 aa14.67□□□□□ -0.06
CLN3-250ENST00000636839 TRGC1P0CF51 173 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 C1orf158Q8N1D5 194 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 IGHV3OR16-12A0A075B7B8 117 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BKO60814 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BJP06899 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BOP23527 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BBP33778 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BDP58876 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BCP62807 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 RIGQ13278 110 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST2H2BEQ16778 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BHQ93079 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BNQ99877 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 HIST1H2BMQ99879 126 aa14.66□□□□□ -0.06
CLN3-250ENST00000636839 IGHV3-16A0A0C4DH30 117 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 INSP01308 110 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 LINC01587Q99440 93 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 SNAI2O43623 268 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 OR5AL1P0C617 328 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 NUTF2P61970 127 aaKnown RBP14.65□□□□□ -0.06
CLN3-250ENST00000636839 WDR73Q6P4I2 378 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 BORCS7Q96B45 105 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 KCNS1Q96KK3 526 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 CNFNQ9BYD5 112 aa14.65□□□□□ -0.06
CLN3-250ENST00000636839 CBY3A6NI87 242 aa14.64□□□□□ -0.07
CLN3-250ENST00000636839 F2Z2F3 143 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms