RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 DGAT2L7PQ6IED9 249 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 A0A087WX48 190 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 CCL21O00585 134 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 LINC01559Q495D7 138 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 MAPKAPK5-AS1Q8N8E1 139 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 A0A087WWL8 130 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 INS-IGF2F8WCM5 200 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 COX6CP09669 75 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 AGPAT4-IT1Q9H0P7 198 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 IGF2RP11717 2491 aa8.62□□□□□ -1.03
CLN3-244ENST00000636147 G3V318 75 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 CRYBA4P53673 196 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 TMEM219Q86XT9 240 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 SMIM2Q9BVW6 85 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 FAM208BQ5VWN6 2430 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 ACACBO00763 2458 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 CACNA1AO00555 2505 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 A0A0U1RRA0 63 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 CD7P09564 240 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 ZNF493Q6ZR52 646 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 ERG28Q9UKR5 140 aa8.61□□□□□ -1.03
CLN3-244ENST00000636147 TRAV21A0A0B4J279 112 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 SPANXB1Q9NS25 103 aaPredicted RBP8.6□□□□□ -1.03
CLN3-244ENST00000636147 SS18L2Q9UHA2 77 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 SETD2Q9BYW2 2564 aaPredicted RBP8.6□□□□□ -1.03
CLN3-244ENST00000636147 COL4A2P08572 1712 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 PRSS29PA6NIE9 313 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 B5MCH6 92 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 FOXC1Q12948 553 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 VMO1Q7Z5L0 202 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 PRO3102Q9H379 93 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 HIGD1BQ9P298 99 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 TRBV20-1A0A075B6N2 111 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 A0A096LNJ9 63 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 TMEM262E9PQX1 116 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 PPDPFLQ8WWR9 84 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 RPL39LQ96EH5 51 aaKnown RBP8.6□□□□□ -1.03
CLN3-244ENST00000636147 RNF5Q99942 180 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 DPH3P1Q9H4G8 78 aa8.6□□□□□ -1.03
CLN3-244ENST00000636147 PTPRBP23467 1997 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 IGKV3D-20A0A0C4DH25 116 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 CEACAM4O75871 244 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 KHDC1LQ5JSQ8 128 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 TP53TG1Q9Y2A0 90 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 SPTBN5Q9NRC6 3674 aaKnown RBP8.59□□□□□ -1.03
CLN3-244ENST00000636147 TRAV12-3A0A0B4J271 114 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 DEFB1P60022 68 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 C8orf86Q6ZUL3 223 aa8.59□□□□□ -1.03
CLN3-244ENST00000636147 E9PLD3 99 aa8.58□□□□□ -1.04
CLN3-244ENST00000636147 FOXI1Q12951 378 aa8.58□□□□□ -1.04
CLN3-244ENST00000636147 TAL2Q16559 108 aa8.58□□□□□ -1.04
CLN3-244ENST00000636147 ZFP2Q6ZN57 461 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 Q6ZS92 163 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 LINC00574Q9H8X3 128 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 IGLV1-47P01700 117 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 MT-ATP8P03928 68 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 PAX8Q06710 450 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 PAPPA-AS1Q5QFB9 102 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 VCX2Q9H322 139 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 FSTL3O95633 263 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 PPP1R17O96001 155 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 CTSGP08311 255 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 SCGB1A1P11684 91 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 OR11H6Q8NGC7 330 aa8.57□□□□□ -1.04
CLN3-244ENST00000636147 ATP6V0E1O15342 81 aa8.56□□□□□ -1.04
CLN3-244ENST00000636147 PRR30Q53SZ7 412 aaPredicted RBP8.56□□□□□ -1.04
CLN3-244ENST00000636147 C1QTNF4Q9BXJ3 329 aa8.56□□□□□ -1.04
CLN3-244ENST00000636147 ANKRD11Q6UB99 2663 aaPredicted RBP8.56□□□□□ -1.04
CLN3-244ENST00000636147 ADARB2-AS1A8MUL3 147 aa8.56□□□□□ -1.04
CLN3-244ENST00000636147 F6UB75 175 aa8.56□□□□□ -1.04
CLN3-244ENST00000636147 ADAMTS20P59510 1910 aa8.56□□□□□ -1.04
CLN3-244ENST00000636147 TRAV8-4A0A0B4J246 113 aa8.56□□□□□ -1.04
CLN3-244ENST00000636147 TMEM95Q3KNT9 176 aa8.56□□□□□ -1.04
CLN3-244ENST00000636147 SONP18583 2426 aaKnown RBP8.55□□□□□ -1.04
CLN3-244ENST00000636147 TM2D2Q9BX73 214 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 IGHV3-73A0A0B4J1V6 119 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 SHISA9B4DS77 424 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 GNRH2O43555 120 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 TSPAN13O95857 204 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 TCF15Q12870 199 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 NTN5Q8WTR8 489 aaPredicted RBP8.55□□□□□ -1.04
CLN3-244ENST00000636147 FANCD2OSQ96PS1 177 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 SPXQ9BT56 116 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 KAAG1Q9UBP8 84 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 SLC25A20O43772 301 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 DUSP14O95147 198 aaKnown RBP8.55□□□□□ -1.04
CLN3-244ENST00000636147 ZNF48Q96MX3 618 aaPredicted RBP8.55□□□□□ -1.04
CLN3-244ENST00000636147 PRO1854Q9UHT4 67 aa8.55□□□□□ -1.04
CLN3-244ENST00000636147 ID1P41134 155 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 NCOR2Q9Y618 2525 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 WI2-2373I1.2A0A1W2PRP0 233 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 THBDP07204 575 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 ZNF688P0C7X2 276 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 IGLC6P0CF74 106 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 C8orf31Q8N9H6 132 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 IGLV11-55A0A075B6I3 123 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 FCN3O75636 299 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 LGALS1P09382 135 aaKnown RBP8.54□□□□□ -1.04
CLN3-244ENST00000636147 C2orf82Q6UX34 121 aa8.54□□□□□ -1.04
CLN3-244ENST00000636147 TMEM190Q8WZ59 177 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms