RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 FXYD5Q96DB9 178 aa9.68□□□□□ -0.86
PNKP-218ENST00000625299 C11orf1Q9H5F2 150 aa9.68□□□□□ -0.86
PNKP-218ENST00000625299 LYRM2Q9NU23 88 aaPredicted RBP9.68□□□□□ -0.86
PNKP-218ENST00000625299 RBAKDNA6NC62 111 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 RBFOX3A6NFN3 312 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 CENPXA8MT69 81 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 OR7C2O60412 319 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 BTCP35070 178 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 RHOHQ15669 191 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 SPANXN2Q5MJ10 180 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 CHAC1Q9BUX1 264 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 RPH3ALQ9UNE2 315 aa9.67□□□□□ -0.86
PNKP-218ENST00000625299 TRAV8-3A0A0A6YYJ7 113 aa9.66□□□□□ -0.86
PNKP-218ENST00000625299 TYMSP04818 313 aa9.66□□□□□ -0.86
PNKP-218ENST00000625299 ATP6V1FQ16864 119 aa9.66□□□□□ -0.86
PNKP-218ENST00000625299 ATP6V0E2Q8NHE4 81 aa9.66□□□□□ -0.86
PNKP-218ENST00000625299 GTSF1LQ9H1H1 148 aa9.66□□□□□ -0.86
PNKP-218ENST00000625299 PKHD1L1Q86WI1 4243 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 DIRC3C9JPN6 131 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 F6UZH7 168 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 IGLV2-8P01709 118 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 UBE2L3P68036 154 aaKnown RBP9.65□□□□□ -0.86
PNKP-218ENST00000625299 TDRG1Q3Y452 100 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 CIRBP-AS1Q8TBR5 109 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 HYLS1Q96M11 299 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 ATP5SQ99766 215 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 SDF2L1Q9HCN8 221 aa9.65□□□□□ -0.86
PNKP-218ENST00000625299 CCDC160A6NGH7 325 aa9.64□□□□□ -0.87
PNKP-218ENST00000625299 RAB32Q13637 225 aa9.64□□□□□ -0.87
PNKP-218ENST00000625299 ZNF876PQ49A33 203 aa9.64□□□□□ -0.87
PNKP-218ENST00000625299 DAZ4Q86SG3 579 aaKnown RBP9.64□□□□□ -0.87
PNKP-218ENST00000625299 C2orf50Q96LR7 162 aa9.64□□□□□ -0.87
PNKP-218ENST00000625299 DAZ3Q9NR90 486 aaKnown RBP9.64□□□□□ -0.87
PNKP-218ENST00000625299 LENEPQ9Y5L5 61 aa9.64□□□□□ -0.87
PNKP-218ENST00000625299 TRAV21A0A0B4J279 112 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 TRBV6-4A0A1B0GX49 114 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 RS1O15537 224 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 ASAH1Q13510 395 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 TOR2AQ5JU69 321 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 CFAP126Q5VTH2 177 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 DPPA3Q6W0C5 159 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 SEC22CQ9BRL7 303 aa9.63□□□□□ -0.87
PNKP-218ENST00000625299 GGTLC3B5MD39 225 aa9.62□□□□□ -0.87
PNKP-218ENST00000625299 OR5C1Q8NGR4 320 aa9.62□□□□□ -0.87
PNKP-218ENST00000625299 CMTM2Q8TAZ6 248 aa9.62□□□□□ -0.87
PNKP-218ENST00000625299 ASB13Q8WXK3 278 aa9.62□□□□□ -0.87
PNKP-218ENST00000625299 TRAV6A0A075B6T7 132 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 RPL37AP61513 92 aaKnown RBP9.61□□□□□ -0.87
PNKP-218ENST00000625299 NHLH2Q02577 135 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 ACOT6Q3I5F7 207 aaPredicted RBP9.61□□□□□ -0.87
PNKP-218ENST00000625299 Q8N976 141 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 TMED6Q8WW62 240 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 KCNS1Q96KK3 526 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 NMES1Q9C002 83 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 KCNIP2Q9NS61 270 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 COX11Q9Y6N1 276 aa9.61□□□□□ -0.87
PNKP-218ENST00000625299 IGKV2D-24A0A075B6R9 120 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 GAGE12JA6NER3 117 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 GAGE1Q13065 139 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 GAGE4Q13068 117 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 GAGE5Q13069 117 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 CNPY1Q3B7I2 92 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 GAGE13Q4V321 117 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 GOLT1AQ6ZVE7 132 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 RMI2Q96E14 147 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 TREM1Q9NP99 234 aa9.6□□□□□ -0.87
PNKP-218ENST00000625299 TRAV8-1A0A0A6YYK1 113 aa9.59□□□□□ -0.87
PNKP-218ENST00000625299 CIDEAO60543 219 aa9.59□□□□□ -0.87
PNKP-218ENST00000625299 EIF3GO75821 320 aaKnown RBP eCLIP9.59□□□□□ -0.87
PNKP-218ENST00000625299 MGST1P10620 155 aaKnown RBP9.59□□□□□ -0.87
PNKP-218ENST00000625299 DNAJC30Q96LL9 226 aa9.59□□□□□ -0.87
PNKP-218ENST00000625299 SDHCQ99643 169 aaPredicted RBP9.59□□□□□ -0.87
PNKP-218ENST00000625299 RNF222A6NCQ9 220 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 PGPA6NDG6 321 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 C17orf112F2Z3M2 114 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 IL7P13232 177 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 HNRNPA3P51991 378 aaKnown RBP9.58□□□□□ -0.88
PNKP-218ENST00000625299 KHDC3LQ587J8 217 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 ZNF506Q5JVG8 444 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 TVP23CQ96ET8 276 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 WDR61Q9GZS3 305 aaKnown RBP9.58□□□□□ -0.88
PNKP-218ENST00000625299 SH3BGRL3Q9H299 93 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 OTORQ9NRC9 128 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 URGCP-MRPS24S4R325 110 aa9.58□□□□□ -0.88
PNKP-218ENST00000625299 PGPEP1LA6NFU8 196 aa9.57□□□□□ -0.88
PNKP-218ENST00000625299 FFAR4Q5NUL3 377 aa9.57□□□□□ -0.88
PNKP-218ENST00000625299 FAM74A1Q5RGS3 127 aa9.57□□□□□ -0.88
PNKP-218ENST00000625299 SGK494Q96LW2 274 aa9.57□□□□□ -0.88
PNKP-218ENST00000625299 NUDT15Q9NV35 164 aa9.57□□□□□ -0.88
PNKP-218ENST00000625299 TCRBP04435 133 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 TAS2R45P59539 299 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 GNG5P63218 68 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 IL15RAQ13261 267 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 TMEM75Q8N9X5 138 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 MBD2Q9UBB5 411 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 KLK12Q9UKR0 248 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 RNF213Q63HN8 5207 aa9.56□□□□□ -0.88
PNKP-218ENST00000625299 LYRM1O43325 122 aa9.55□□□□□ -0.88
PNKP-218ENST00000625299 IGLV2-11P01706 119 aa9.55□□□□□ -0.88
PNKP-218ENST00000625299 CYB561D1Q8N8Q1 229 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 135.7 ms