RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TNFRSF18Q9Y5U5 241 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 MAP1AP78559 2803 aaPredicted RBP10.13□□□□□ -0.79
CLN3-210ENST00000563874 IGHV7-4-1A0A0J9YVY3 117 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 H3BVH4 76 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 IGF1P05019 195 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 NRACQ8N912 160 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 MYOZ3Q8TDC0 251 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 EBI3Q14213 229 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 LAGE3Q14657 143 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 C8orf86Q6ZUL3 223 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 LINC00527Q9UJ94 153 aa10.13□□□□□ -0.79
CLN3-210ENST00000563874 ATP5LO75964 103 aa10.12□□□□□ -0.79
CLN3-210ENST00000563874 FAM110DQ8TAY7 271 aaPredicted RBP10.12□□□□□ -0.79
CLN3-210ENST00000563874 PIFOQ8TCI5 191 aa10.12□□□□□ -0.79
CLN3-210ENST00000563874 HIGD1BQ9P298 99 aa10.12□□□□□ -0.79
CLN3-210ENST00000563874 TEX48A0A1B0GUV7 120 aa10.12□□□□□ -0.79
CLN3-210ENST00000563874 CEND1Q8N111 149 aa10.12□□□□□ -0.79
CLN3-210ENST00000563874 SLC50A1Q9BRV3 221 aa10.12□□□□□ -0.79
CLN3-210ENST00000563874 SPTBN4Q9H254 2564 aa10.11□□□□□ -0.79
CLN3-210ENST00000563874 DEFB1P60022 68 aa10.11□□□□□ -0.79
CLN3-210ENST00000563874 PRR9Q5T870 116 aa10.11□□□□□ -0.79
CLN3-210ENST00000563874 PHLDA1Q8WV24 401 aaPredicted RBP10.11□□□□□ -0.79
CLN3-210ENST00000563874 FAM110AQ9BQ89 295 aa10.11□□□□□ -0.79
CLN3-210ENST00000563874 YAE1D1Q9NRH1 226 aa10.11□□□□□ -0.79
CLN3-210ENST00000563874 AZU1P20160 251 aa10.11□□□□□ -0.79
CLN3-210ENST00000563874 GTSF1LQ9H1H1 148 aa10.11□□□□□ -0.79
CLN3-210ENST00000563874 RBAKDNA6NC62 111 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 MINOS1Q5TGZ0 78 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 MINOS1-NBL1R4GNA1 71 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 COL12A1Q99715 3063 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 MTURNQ8N3F0 131 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 METTL26Q96S19 204 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 M0R381 172 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 SAA4P35542 130 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 C11orf71Q6IPW1 123 aa10.1□□□□□ -0.79
CLN3-210ENST00000563874 K7ENP7 123 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 LCNL1Q6ZST4 164 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 TMEM219Q86XT9 240 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 C16orf92Q96LL3 132 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 VCX2Q9H322 139 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 OOSP1A8MZH6 123 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 ADORA2A-AS1P86434 159 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 AMTNQ6UX39 209 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 DEFB104AQ8WTQ1 72 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 HIST1H4GQ99525 98 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 TM2D2Q9BX73 214 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 SIRPDQ9H106 197 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 VPS13CQ709C8 3753 aa10.09□□□□□ -0.79
CLN3-210ENST00000563874 A0A087WX48 190 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 A0A1W2PPR1 153 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 FBXL19-AS1Q494R0 122 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 SCGB1A1P11684 91 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 SRSF1Q07955 248 aaKnown RBP eCLIP10.08□□□□□ -0.8
CLN3-210ENST00000563874 AJUBAQ96IF1 538 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 IGHV3OR16-10A0A075B7F0 116 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 IGLL5B9A064 214 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 H3BMG7 143 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.08□□□□□ -0.8
CLN3-210ENST00000563874 WFDC2Q14508 124 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 EEF1AKMT3Q96AZ1 226 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 C20orf173Q96LM9 149 aa10.08□□□□□ -0.8
CLN3-210ENST00000563874 RPL39LQ96EH5 51 aaKnown RBP10.07□□□□□ -0.8
CLN3-210ENST00000563874 IGKV3-7A0A075B6H7 116 aa10.07□□□□□ -0.8
CLN3-210ENST00000563874 SMIM20Q8N5G0 67 aa10.07□□□□□ -0.8
CLN3-210ENST00000563874 C12orf74Q32Q52 190 aa10.06□□□□□ -0.8
CLN3-210ENST00000563874 PSMG4Q5JS54 123 aa10.06□□□□□ -0.8
CLN3-210ENST00000563874 C14orf178Q8N769 122 aaPredicted RBP10.06□□□□□ -0.8
CLN3-210ENST00000563874 SMIM2Q9BVW6 85 aa10.06□□□□□ -0.8
CLN3-210ENST00000563874 TGFAP01135 160 aa10.06□□□□□ -0.8
CLN3-210ENST00000563874 C9orf47Q6ZRZ4 202 aa10.06□□□□□ -0.8
CLN3-210ENST00000563874 E9PLD3 99 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 SH2D6Q7Z4S9 175 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 SCGB3A1Q96QR1 104 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 GEMIN7Q9H840 131 aaKnown RBP10.05□□□□□ -0.8
CLN3-210ENST00000563874 S100A4P26447 101 aaKnown RBP10.05□□□□□ -0.8
CLN3-210ENST00000563874 UBE2E1P51965 193 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 GLMPQ8WWB7 406 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 HIVEP3Q5T1R4 2406 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 TRBV12-3P01733 135 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 MGPP08493 103 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 PLNP26678 52 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 CYSLTR1Q9Y271 337 aa10.05□□□□□ -0.8
CLN3-210ENST00000563874 F8VRH5 84 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 M0QXV9 152 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 ATP5G2Q06055 141 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 UNQ9165/PRO28630Q6UXU0 137 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 FOXI2Q6ZQN5 318 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 RASL10AQ92737 203 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 CACNA1AO00555 2505 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 CENPVL3A0A0U1RRI6 287 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 OR11H12B2RN74 326 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 F6UB75 175 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 H7C1H1 209 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 RPL11P62913 178 aaKnown RBP10.04□□□□□ -0.8
CLN3-210ENST00000563874 ETDBQ3ZM63 59 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 OR11H1Q8NG94 326 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 OR11H2Q8NH07 326 aa10.04□□□□□ -0.8
CLN3-210ENST00000563874 TRBV7-1A0A0A6YYK4 115 aa10.03□□□□□ -0.8
CLN3-210ENST00000563874 SUMO2P61956 95 aaKnown RBP10.03□□□□□ -0.8
CLN3-210ENST00000563874 CITED2Q99967 270 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms