RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 H3BRM9 83 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 SAP30O75446 220 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 SMIM17P0DL12 118 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 FXYD2P54710 66 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 ZC2HC1BQ5TFG8 222 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 LCNL1Q6ZST4 164 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 TMEM160Q9NX00 188 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 U3KQE9 123 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 DOPEY2Q9Y3R5 2298 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 SORL1Q92673 2214 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 TRAV41A0A0B4J266 112 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 A6NDN8 102 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 F6UB75 175 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 K7ERJ3 54 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 IGHV3-11P01762 117 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 IGKCP01834 107 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 GCSHP23434 173 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 RAB9AP51151 201 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 ATP5G2Q06055 141 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 KLK9Q2XQG4 91 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 SPANXN1Q5VSR9 72 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 UFSP1Q6NVU6 142 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 C9orf47Q6ZRZ4 202 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 GPHB5Q86YW7 130 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 PIFOQ8TCI5 191 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 MRPL35Q9NZE8 188 aaKnown RBP5.71□□□□□ -1.5
LIMA1-213ENST00000552720 KLK9Q9UKQ9 250 aa5.71□□□□□ -1.5
LIMA1-213ENST00000552720 PKD1L2Q7Z442 2459 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 TRBV7-1A0A0A6YYK4 115 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 S100A7P31151 101 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 LY6EQ16553 131 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 LINC00528Q8N1L1 170 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 MAPKAPK5-AS1Q8N8E1 139 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 OR4X2Q8NGF9 303 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 DEFB104AQ8WTQ1 72 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 GLMPQ8WWB7 406 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 AP1S3Q96PC3 154 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 VPS25Q9BRG1 176 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 NPFFR1Q9GZQ6 430 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 KLK15Q9H2R5 256 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 USP9XQ93008 2570 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-213ENST00000552720 M0R381 172 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 SIVA1O15304 175 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 EDN2P20800 178 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 ARL3P36405 182 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 Q6ZS46 218 aa5.7□□□□□ -1.5
LIMA1-213ENST00000552720 CUBNO60494 3623 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 TRBV25-1A0A075B6N4 114 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 IGHV4-39P01824 125 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 LAGE3Q14657 143 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 RPL39LQ96EH5 51 aaKnown RBP5.69□□□□□ -1.5
LIMA1-213ENST00000552720 CHAC1Q9BUX1 264 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 IGSF10Q6WRI0 2623 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 K7EP34 96 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 DPM2O94777 84 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 IGHV4-38-2P0DP08 117 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 SRD5A1P18405 259 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 UCNP55089 124 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 RPL11P62913 178 aaKnown RBP5.69□□□□□ -1.5
LIMA1-213ENST00000552720 C19orf54Q5BKX5 351 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 ZFAND2AQ8N6M9 145 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 ITLN2Q8WWU7 325 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-213ENST00000552720 COL25A1Q9BXS0 654 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-213ENST00000552720 MOB4Q9Y3A3 225 aa5.69□□□□□ -1.5
LIMA1-213ENST00000552720 CHTOPQ9Y3Y2 248 aaKnown RBP5.69□□□□□ -1.5
LIMA1-213ENST00000552720 POLQO75417 2590 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 A0A1W2PPM0 123 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 SMIM15Q7Z3B0 74 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 C14orf178Q8N769 122 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-213ENST00000552720 MYO18BQ8IUG5 2567 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 IGHV4-61A0A0C4DH41 118 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 GNRH2O43555 120 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 BLCAPP62952 87 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 ANXA2RQ3ZCQ2 193 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 MYOZ3Q8TDC0 251 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 WFDC12Q8WWY7 111 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 MRPL53Q96EL3 112 aaKnown RBP5.68□□□□□ -1.5
LIMA1-213ENST00000552720 MEGF9Q9H1U4 602 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 HIF1ANQ9NWT6 349 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 SPCS1Q9Y6A9 102 aa5.68□□□□□ -1.5
LIMA1-213ENST00000552720 USP9YO00507 2555 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-213ENST00000552720 IGHV4-4A0A075B6R2 117 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 SOCS3O14543 225 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 ATP5LO75964 103 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 C9orf139Q6ZV77 190 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 GTF2H5Q6ZYL4 71 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 NEGR1Q7Z3B1 354 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 RASL10AQ92737 203 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 NHP2Q9NX24 153 aaKnown RBP5.67□□□□□ -1.5
LIMA1-213ENST00000552720 ANKRD17O75179 2603 aaKnown RBP5.67□□□□□ -1.5
LIMA1-213ENST00000552720 A0A087WX48 190 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 IGHV1-69DA0A0B4J2H0 117 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 IGHV1-69P01742 117 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 MGPP08493 103 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 SMIM13P0DJ93 91 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 GNLYP22749 145 aa5.67□□□□□ -1.5
LIMA1-213ENST00000552720 S100A4P26447 101 aaKnown RBP5.67□□□□□ -1.5
LIMA1-213ENST00000552720 RNASE4P34096 147 aaKnown RBP5.67□□□□□ -1.5
LIMA1-213ENST00000552720 SRSF1Q07955 248 aaKnown RBP eCLIP5.67□□□□□ -1.5
LIMA1-213ENST00000552720 SMIM2Q9BVW6 85 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms