RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 SMCO1Q147U7 214 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 OPCMLQ14982 345 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 GUK1Q16774 197 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 RNASE10Q5GAN6 216 aaKnown RBP2.58□□□□□ -2
SNHG1-220ENST00000544550 KCNIP4Q6PIL6 250 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 SPINK6Q6UWN8 80 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 CYP2G1PQ6ZSU1 146 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 LHFPL1Q86WI0 220 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 CROCCP3Q8IVE0 287 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 SELENOHQ8IZQ5 122 aaKnown RBP2.58□□□□□ -2
SNHG1-220ENST00000544550 C9orf163Q8N9P6 203 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 OR4D10Q8NGI6 311 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 GLYATL2Q8WU03 294 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 YIPF6Q96EC8 236 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 MRPL53Q96EL3 112 aaKnown RBP2.58□□□□□ -2
SNHG1-220ENST00000544550 DPH3Q96FX2 82 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 CIB3Q96Q77 187 aaPredicted RBP2.58□□□□□ -2
SNHG1-220ENST00000544550 SRRQ9GZT4 340 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 RBKSQ9H477 322 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 NAA60Q9H7X0 242 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 VAX2Q9UIW0 290 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 BLOC1S6Q9UL45 172 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 PAIP2BQ9ULR5 123 aaKnown RBP2.58□□□□□ -2
SNHG1-220ENST00000544550 GPR132Q9UNW8 380 aa2.58□□□□□ -2
SNHG1-220ENST00000544550 C14orf166Q9Y224 244 aaKnown RBP2.58□□□□□ -2
SNHG1-220ENST00000544550 A0A087WWC5 75 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 LOC100131303A0A0U1RQF7 123 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 SMIM31A0A1B0GVY4 71 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 FBLL1A6NHQ2 334 aaKnown RBP2.57□□□□□ -2
SNHG1-220ENST00000544550 PHOX2AO14813 284 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 CTDSPLO15194 276 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 MRPS12O15235 138 aaKnown RBP2.57□□□□□ -2
SNHG1-220ENST00000544550 ZNF253O75346 499 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 MED6O75586 246 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 CRISP2P16562 243 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 MXD1Q05195 221 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 CIRBPQ14011 172 aaKnown RBP2.57□□□□□ -2
SNHG1-220ENST00000544550 ATRAIDQ6UW56 229 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 DPPA3Q6W0C5 159 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 DAZ4Q86SG3 579 aaKnown RBP2.57□□□□□ -2
SNHG1-220ENST00000544550 OR51S1Q8NGJ8 323 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 OR13C8Q8NGS7 320 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 TERB2Q8NHR7 220 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 LHFPL5Q8TAF8 219 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 MARCH1Q8TCQ1 289 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 FAM19A4Q96LR4 140 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 CHCHD7Q9BUK0 85 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 ARV1Q9H2C2 271 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 DAZ3Q9NR90 486 aaKnown RBP2.57□□□□□ -2
SNHG1-220ENST00000544550 SLC39A9Q9NUM3 307 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 TP53TG3Q9ULZ0 132 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 PRELID1Q9Y255 219 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 KCNIP3Q9Y2W7 256 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 KIF25-AS1Q9Y6Z4 181 aa2.57□□□□□ -2
SNHG1-220ENST00000544550 TRAV26-2A0A0B4J265 109 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 A0A0B4J2A0 478 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 TRBV7-9A0A0J9YWB2 115 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 FAM231BA6NCW3 169 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 ANKRD65E5RJM6 399 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 M0R2P5 195 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 WRBO00258 174 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 SLC17A3O00476 420 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 HIST1H1EP10412 219 aaKnown RBP2.56□□□□□ -2
SNHG1-220ENST00000544550 MGST1P10620 155 aaKnown RBP2.56□□□□□ -2
SNHG1-220ENST00000544550 SRPXP78539 464 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 PRR3P79522 188 aaKnown RBP2.56□□□□□ -2
SNHG1-220ENST00000544550 SURF2Q15527 256 aaPredicted RBP2.56□□□□□ -2
SNHG1-220ENST00000544550 TMEM78Q5T7P6 136 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 FAM159AQ6UWV7 190 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 SDIM1Q6ZPB5 146 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 LINC00305Q7Z4B0 112 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 SAMD12Q8N8I0 201 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 SLC25A29Q8N8R3 303 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 OR10G8Q8NGN5 311 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 UBE2WQ96B02 151 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 PRAC1Q96KF2 57 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 LINC00479Q96M42 142 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 ATP5SQ99766 215 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 ALKBH7Q9BT30 221 aaPredicted RBP2.56□□□□□ -2
SNHG1-220ENST00000544550 ARL6Q9H0F7 186 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 SHPKQ9UHJ6 478 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 LPAP08519 4548 aa2.56□□□□□ -2
SNHG1-220ENST00000544550 IGHV3-64A0A075B6Q5 118 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 A0A087WX48 190 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 A0A087WYN8 130 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.55□□□□□ -2
SNHG1-220ENST00000544550 DUXBA0A1W2PPF3 345 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 SMCO3A2RU48 225 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 PGPA6NDG6 321 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 K7EPK0 472 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 CCSO14618 274 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 CRPP02741 224 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 IGLC2P0DOY2 106 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 IAPPP10997 89 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 ANXA3P12429 323 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 FGF8P55075 233 aaPredicted RBP2.55□□□□□ -2
SNHG1-220ENST00000544550 UBE2MP61081 183 aaKnown RBP2.55□□□□□ -2
SNHG1-220ENST00000544550 ERCC8Q13216 396 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 SRSF9Q13242 221 aaKnown RBP eCLIP2.55□□□□□ -2
SNHG1-220ENST00000544550 TMEM183BQ1AE95 376 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 225.8 ms