RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 C6orf52Q5T4I8 152 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q6ZS92 163 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00299Q6ZSB3 139 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF833PQ6ZTB9 187 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 SLC25A26Q70HW3 274 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 C10orf71Q711Q0 1435 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 C5orf38Q86SI9 138 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 NDUFA11Q86Y39 141 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 SBSPONQ8IVN8 264 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 C4orf33Q8N1A6 199 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00269Q8N2A0 174 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 FAM19A2Q8N3H0 131 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 C15orf53Q8NAA6 179 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 OR8B3Q8NGG8 313 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYOZ3Q8TDC0 251 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 C10orf105Q8TEF2 133 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 DYNLRB2Q8TF09 96 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PPDPFLQ8WWR9 84 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 CASKIN1Q8WXD9 1431 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 LSM10Q969L4 123 aaKnown RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 DSCR8Q96T75 97 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 SCN2AQ99250 2005 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 NABP2Q9BQ15 211 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 VAMP8Q9BV40 100 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 SHANK3Q9BYB0 1731 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ATG5Q9H1Y0 275 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 CXCL16Q9H2A7 254 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 LHFPL6Q9Y693 200 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00312Q9Y6C7 94 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 R4GN34 69 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 MINOS1-NBL1R4GNA1 71 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 GON4LQ3T8J9 2241 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PIKFYVEQ9Y2I7 2098 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 NCKAP5O14513 1909 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PTPRSQ13332 1948 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ADAMTS9Q9P2N4 1935 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 AKAP11Q9UKA4 1901 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 LAMB1P07942 1786 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 LAMB2P55268 1798 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYO3AQ8NEV4 1616 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCDC88BA6NC98 1476 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PTPRMP28827 1452 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ERVK-7P63135 1459 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 IQSEC2Q5JU85 1478 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLEKHH2Q8IVE3 1493 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 KIF13AQ9H1H9 1805 aa0.34□□□□□ -2.36
RNU4-54P-201ENST00000516428 ROBO1Q9Y6N7 1651 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PRDM15P57071 1507 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ABCC2Q92887 1545 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 DISP1Q96F81 1524 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 KDM5DQ9BY66 1539 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLXNA3P51805 1871 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PEAK1Q9H792 1746 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TNS1Q9HBL0 1735 aaKnown RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 NWD2Q9ULI1 1742 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 UNC13BO14795 1591 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 DNMBPQ6XZF7 1577 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CFAP74Q9C0B2 1584 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 DIP2CQ9Y2E4 1556 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYH1P12882 1939 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 GREB1Q4ZG55 1949 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ABCC5O15440 1437 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 SCAPERQ9BY12 1400 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 LAMB4A4D0S4 1761 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PPLO60437 1756 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV23DV6A0A075B6W5 121 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV7-1A0A0A6YYK4 115 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV2-24A0A0C4DH68 120 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 LOC107984156A0A0G2JMH3 177 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV10-1A0A0K0K1A3 114 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV7-7A0A0K0K1E9 115 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV10-3A0A0K0K1G6 114 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TCRBV4S1A1TA0A5B7 111 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 RBAKDNA6NC62 111 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 LRCOL1A6NCL2 159 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 NAP1L6A6NFF2 107 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 A6NIN4 97 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 C2orf70A6NJV1 201 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 IBA57-AS1B1ANH7 110 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 B4DSR2 109 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 F8W1H4 67 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 H3BQF6 201 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 K7EP34 96 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ATOX1O00244 68 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 GNGT2O14610 69 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 NDUFC1O43677 76 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLV6-57P01721 117 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGHV3-33P01772 117 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CTSGP08311 255 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PIRTP0C851 137 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLC1P0CG04 106 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAPPC2P0DI81 140 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAPPC2BP0DI82 140 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 IL7P13232 177 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 HRES1P13985 223 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CBLN1P23435 193 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 SNCAP37840 140 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTAP10-8P60410 259 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTDAPP60985 99 aa0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms