RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ZNF705DP0CH99 300 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-209ENST00000504627 ZNF705BP0CI00 300 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-209ENST00000504627 FXYD7P58549 80 aa12.96□□□□□ -0.33
SQSTM1-209ENST00000504627 FAM19A4Q96LR4 140 aa12.96□□□□□ -0.33
SQSTM1-209ENST00000504627 IGHV3OR16-12A0A075B7B8 117 aa12.95□□□□□ -0.34
SQSTM1-209ENST00000504627 CRISP2P16562 243 aa12.95□□□□□ -0.34
SQSTM1-209ENST00000504627 SMUG1Q53HV7 270 aa12.95□□□□□ -0.34
SQSTM1-209ENST00000504627 ZC2HC1AQ96GY0 325 aa12.95□□□□□ -0.34
SQSTM1-209ENST00000504627 SFRP2Q96HF1 295 aa12.95□□□□□ -0.34
SQSTM1-209ENST00000504627 CLUHP3Q96NS8 147 aa12.95□□□□□ -0.34
SQSTM1-209ENST00000504627 A0A087WWC5 75 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 C7orf77A4D0Y5 90 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 MT-ND4LP03901 98 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 FAM231DQ6ZW35 169 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 C8orf49Q96NF6 230 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 OSTCQ9NRP0 149 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 APLNQ9ULZ1 77 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 CELA1Q9UNI1 258 aa12.94□□□□□ -0.34
SQSTM1-209ENST00000504627 PPP1R2P9O14990 202 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 LEPP41159 167 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 OR5I1Q13606 314 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 RNF212Q495C1 297 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 PRR27Q6MZM9 219 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 ZFAND2AQ8N6M9 145 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 C15orf54Q8N8G6 183 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 ANAPC16Q96DE5 110 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 CTDSP1Q9GZU7 261 aa12.93□□□□□ -0.34
SQSTM1-209ENST00000504627 KLLNB2CW77 178 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 TSPOP30536 169 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 EMP1P54849 157 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 ERVFC1-1P60608 527 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 IBA57Q5T440 356 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 FAM162BQ5T6X4 162 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 ATRAIDQ6UW56 229 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 AMTNQ6UX39 209 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 ZNF705AQ6ZN79 300 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 NEU1Q99519 415 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 RPS10P5Q9NQ39 176 aa12.92□□□□□ -0.34
SQSTM1-209ENST00000504627 IGHV4-4A0A075B6R2 117 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 DEFB131BA0A096LNP1 70 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 TMEM189A5PLL7 270 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 C19orf71A6NCJ1 209 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 SMIM9A6NGZ8 99 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 C12orf74Q32Q52 190 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 OR10G8Q8NGN5 311 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 TMEM242Q9NWH2 141 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 GOLT1BQ9Y3E0 138 aa12.91□□□□□ -0.34
SQSTM1-209ENST00000504627 VPS13DQ5THJ4 4388 aa12.9□□□□□ -0.34
SQSTM1-209ENST00000504627 H7BYZ3 331 aa12.9□□□□□ -0.34
SQSTM1-209ENST00000504627 PFN1P07737 140 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-209ENST00000504627 SPART-AS1P0CW21 52 aa12.9□□□□□ -0.34
SQSTM1-209ENST00000504627 DAZAP1Q96EP5 407 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-209ENST00000504627 RNASE7Q9H1E1 156 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-209ENST00000504627 SH2D1AO60880 128 aa12.89□□□□□ -0.35
SQSTM1-209ENST00000504627 P01737 135 aa12.89□□□□□ -0.35
SQSTM1-209ENST00000504627 CDKN1BP46527 198 aa12.89□□□□□ -0.35
SQSTM1-209ENST00000504627 CT83Q5H943 113 aa12.89□□□□□ -0.35
SQSTM1-209ENST00000504627 AMBPP02760 352 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 GPX1P07203 203 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 CRIP1P50238 77 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 ZNF80P51504 273 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 PRR9Q5T870 116 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 Q6AWC8 147 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 NUDT10Q8NFP7 164 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 NUDT11Q96G61 164 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 RPP21Q9H633 154 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 V9GYV3 84 aa12.88□□□□□ -0.35
SQSTM1-209ENST00000504627 FRAS1Q86XX4 4008 aa12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 DNAH10Q8IVF4 4471 aa12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 TRAV21A0A0B4J279 112 aa12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 C7orf71A4D174 169 aa12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 FABP5P3A8MUU1 101 aa12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 ZNF705GA8MUZ8 300 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 GATCO43716 136 aaKnown RBP12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 TMEM208Q9BTX3 173 aa12.87□□□□□ -0.35
SQSTM1-209ENST00000504627 TEX48A0A1B0GUV7 120 aa12.86□□□□□ -0.35
SQSTM1-209ENST00000504627 BTN1A1Q13410 526 aa12.86□□□□□ -0.35
SQSTM1-209ENST00000504627 SPINK13Q1W4C9 94 aa12.86□□□□□ -0.35
SQSTM1-209ENST00000504627 NDUFAF3Q9BU61 184 aa12.86□□□□□ -0.35
SQSTM1-209ENST00000504627 J3KRW8 73 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 M0R2Z0 102 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 RRN3P1Q2M238 152 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 LINC01559Q495D7 138 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 GFI1BQ5VTD9 330 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 C1orf158Q8N1D5 194 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 IMMP2LQ96T52 175 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 SMCO4Q9NRQ5 59 aa12.85□□□□□ -0.35
SQSTM1-209ENST00000504627 RNASE4P34096 147 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-209ENST00000504627 RPS20P60866 119 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-209ENST00000504627 FAM222AQ5U5X8 452 aa12.84□□□□□ -0.35
SQSTM1-209ENST00000504627 OR2D3Q8NGH3 330 aa12.84□□□□□ -0.35
SQSTM1-209ENST00000504627 C20orf144Q9BQM9 153 aa12.84□□□□□ -0.35
SQSTM1-209ENST00000504627 DKK2Q9UBU2 259 aa12.84□□□□□ -0.35
SQSTM1-209ENST00000504627 XKRY2A2RUG3 117 aa12.83□□□□□ -0.36
SQSTM1-209ENST00000504627 A8MWL6 223 aa12.83□□□□□ -0.36
SQSTM1-209ENST00000504627 SCO1O75880 301 aa12.83□□□□□ -0.36
SQSTM1-209ENST00000504627 INSP01308 110 aa12.83□□□□□ -0.36
SQSTM1-209ENST00000504627 CXCL1P09341 107 aa12.83□□□□□ -0.36
SQSTM1-209ENST00000504627 KIR3DS1Q14943 382 aa12.83□□□□□ -0.36
SQSTM1-209ENST00000504627 CBLN2Q8IUK8 224 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms