RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 J3QLW9 94 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 K7ERJ3 54 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 PDCD5O14737 125 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 NCR3O14931 201 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TPST1O60507 370 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 SNAPC5O75971 98 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 DNAL4O96015 105 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 CYB5AP00167 134 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 IFNGP01579 166 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 CD2P06729 351 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 DBIP07108 87 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 HMGA1P17096 107 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 RPS3P23396 243 aaKnown RBP eCLIP0.54□□□□□ -2.32
VPS50-219ENST00000495039 RPL38P63173 70 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 SELENOWP63302 87 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 DCDP81605 110 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 PLGLB1Q02325 96 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 DEFB133Q30KQ1 61 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 VMA21Q3ZAQ7 101 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 IZUMO2Q6UXV1 221 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 RPS27LQ71UM5 84 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 PHF5AQ7RTV0 110 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 LINC00305Q7Z4B0 112 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 Q8IYB0 196 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 C8orf59Q8N0T1 100 aaPredicted RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 DEFB123Q8N688 67 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 Q8N6K4 173 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 OR8J3Q8NGG0 315 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 OR5AK2Q8NH90 309 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 C10orf82Q8WW14 230 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 S100ZQ8WXG8 99 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TCEAL4Q96EI5 215 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 S100A16Q96FQ6 103 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 RMND5BQ96G75 393 aaPredicted RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 PRELID3AQ96N28 172 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 OR4C12Q96R67 309 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 CGREF1Q99674 301 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TPT1P8Q9HAU6 139 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 OTORQ9NRC9 128 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TAS2R7Q9NYW3 318 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TMEM14CQ9P0S9 112 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TRAPPC2LQ9UL33 140 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 MED31Q9Y3C7 131 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 DNAJC15Q9Y5T4 150 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 PLIN4Q96Q06 1357 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 C10orf71Q711Q0 1435 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 SCN3AQ9NY46 2000 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 NEXMIFQ5QGS0 1516 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 ADGRB1O14514 1584 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 INO80Q9ULG1 1556 aaPredicted RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 ZCCHC11Q5TAX3 1644 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 MYO3AQ8NEV4 1616 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 MADDQ8WXG6 1647 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 ADCY10Q96PN6 1610 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TET3O43151 1660 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 KIF1BO60333 1816 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 BORCS7-ASMTA0A0B4J1R7 106 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TRBV27A0A0K0K1C4 114 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 SPTY2D1-AS1A0A0U1RR47 76 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 CPSF4LA6NMK7 179 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 H0YGG7 62 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 J3KT08 172 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 DEGS1O15121 323 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 MRPL33O75394 65 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 TNFSF15O95150 251 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TRACP01848 142 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 APOC1P02654 83 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 STATHP02808 62 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 HMGN2P05204 90 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 NBEAP1P0C6P0 100 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 SCGB1A1P11684 91 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 FABP4P15090 132 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 COX7CP15954 63 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 FAUP35544 74 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 POLR2HP52434 150 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 ROMO1P60602 79 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 RPS28P62857 69 aaKnown RBP0.53□□□□□ -2.32
VPS50-219ENST00000495039 PSPHP78330 225 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 BTG2P78543 158 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 DIAPH2-AS1Q14236 149 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 NEDD8Q15843 81 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 CCSMST1Q4G0I0 132 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 C6orf52Q5T4I8 152 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 C1orf134Q5TEV5 83 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TMEM244Q5VVB8 128 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 RPL13AP3Q6NVV1 102 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 SLC48A1Q6P1K1 146 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 GLIPR1L1Q6UWM5 242 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 PATE2Q6UY27 113 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 OR8I2Q8N0Y5 310 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 OR5AS1Q8N127 324 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TOMM5Q8N4H5 51 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TMEM229BQ8NBD8 167 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 MORN4Q8NDC4 146 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 PLPP5Q8NEB5 264 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 OR10AG1Q8NH19 301 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 CCL4L1Q8NHW4 92 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 NAT14Q8WUY8 206 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 TMEM203Q969S6 136 aa0.53□□□□□ -2.32
VPS50-219ENST00000495039 CCDC115Q96NT0 180 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms